Cluster: Rep_892_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_892
- CGC Family ID: CGCFAM_04720
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_892_c_38 | Rep_892_c_38_4 | 4810 | 6024 | + | 2.A.1.67.1 |
| TF | Rep_892_c_38 | Rep_892_c_38_5 | 6059 | 7141 | - | LacI |
| TC | Rep_892_c_38 | Rep_892_c_38_6 | 7219 | 8076 | - | 3.A.1.1.42 |
| TC | Rep_892_c_38 | Rep_892_c_38_7 | 8073 | 9014 | - | 3.A.1.1.42 |
| STP | Rep_892_c_38 | Rep_892_c_38_8 | 9078 | 10400 | - | SBP_bac_1 |
| CAZyme | Rep_892_c_38 | Rep_892_c_38_9 | 11446 | 13419 | + | GH78 |
| CAZyme | Rep_892_c_38 | Rep_892_c_38_10 | 14259 | 15458 | + | GH78 |
Gene ID: Rep_892_c_38_4
Type: TC
Location: 4810 - 6024 (+)
Type: TC
Location: 4810 - 6024 (+)
Gene ID: Rep_892_c_38_5
Type: TF
Location: 6059 - 7141 (-)
Type: TF
Location: 6059 - 7141 (-)
Gene ID: Rep_892_c_38_6
Type: TC
Location: 7219 - 8076 (-)
Type: TC
Location: 7219 - 8076 (-)
Gene ID: Rep_892_c_38_7
Type: TC
Location: 8073 - 9014 (-)
Type: TC
Location: 8073 - 9014 (-)
Gene ID: Rep_892_c_38_8
Type: STP
Location: 9078 - 10400 (-)
Type: STP
Location: 9078 - 10400 (-)
Gene ID: Rep_892_c_38_9
Type: CAZyme
Location: 11446 - 13419 (+)
Type: CAZyme
Location: 11446 - 13419 (+)
Gene ID: Rep_892_c_38_10
Type: CAZyme
Location: 14259 - 15458 (+)
Type: CAZyme
Location: 14259 - 15458 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia culturomici
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.