Cluster: Rep_875_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_875
- CGC Family ID: CGCFAM_08469
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_875_c_0 | Rep_875_c_0_144 | 170570 | 173047 | - | 3.A.1.125.3 |
| TC | Rep_875_c_0 | Rep_875_c_0_145 | 173047 | 174114 | - | 3.A.1.125.3 |
| TF | Rep_875_c_0 | Rep_875_c_0_146 | 174230 | 174886 | - | GerE |
| TC | Rep_875_c_0 | Rep_875_c_0_147 | 175157 | 175981 | - | 3.A.1.1.23 |
| TC | Rep_875_c_0 | Rep_875_c_0_148 | 175978 | 176946 | - | 3.A.1.1.23 |
| TC | Rep_875_c_0 | Rep_875_c_0_149 | 176977 | 178281 | - | 3.A.1.1.23 |
| TF | Rep_875_c_0 | Rep_875_c_0_150 | 178691 | 179386 | + | HTH_DeoR |
| CAZyme | Rep_875_c_0 | Rep_875_c_0_151 | 179383 | 180771 | + | GH4 |
| CAZyme | Rep_875_c_0 | Rep_875_c_0_152 | 180764 | 183886 | + | GH38 |
| pfam | Rep_875_c_0 | Rep_875_c_0_153 | 183883 | 184938 | + | Phosphodiest |
| pfam | Rep_875_c_0 | Rep_875_c_0_154 | 184932 | 185576 | + | Hydrolase | HAD | HAD_2 |
| CAZyme | Rep_875_c_0 | Rep_875_c_0_155 | 185573 | 186871 | + | GH125 |
| CAZyme | Rep_875_c_0 | Rep_875_c_0_156 | 186855 | 188399 | - | GH20 |
Gene ID: Rep_875_c_0_144
Type: TC
Location: 170570 - 173047 (-)
Type: TC
Location: 170570 - 173047 (-)
Gene ID: Rep_875_c_0_145
Type: TC
Location: 173047 - 174114 (-)
Type: TC
Location: 173047 - 174114 (-)
Gene ID: Rep_875_c_0_146
Type: TF
Location: 174230 - 174886 (-)
Type: TF
Location: 174230 - 174886 (-)
Gene ID: Rep_875_c_0_147
Type: TC
Location: 175157 - 175981 (-)
Type: TC
Location: 175157 - 175981 (-)
Gene ID: Rep_875_c_0_148
Type: TC
Location: 175978 - 176946 (-)
Type: TC
Location: 175978 - 176946 (-)
Gene ID: Rep_875_c_0_149
Type: TC
Location: 176977 - 178281 (-)
Type: TC
Location: 176977 - 178281 (-)
Gene ID: Rep_875_c_0_150
Type: TF
Location: 178691 - 179386 (+)
Type: TF
Location: 178691 - 179386 (+)
Gene ID: Rep_875_c_0_151
Type: CAZyme
Location: 179383 - 180771 (+)
Type: CAZyme
Location: 179383 - 180771 (+)
Gene ID: Rep_875_c_0_152
Type: CAZyme
Location: 180764 - 183886 (+)
Type: CAZyme
Location: 180764 - 183886 (+)
Gene ID: Rep_875_c_0_153
Type: pfam
Location: 183883 - 184938 (+)
Type: pfam
Location: 183883 - 184938 (+)
Gene ID: Rep_875_c_0_154
Type: pfam
Location: 184932 - 185576 (+)
Type: pfam
Location: 184932 - 185576 (+)
Gene ID: Rep_875_c_0_155
Type: CAZyme
Location: 185573 - 186871 (+)
Type: CAZyme
Location: 185573 - 186871 (+)
Gene ID: Rep_875_c_0_156
Type: CAZyme
Location: 186855 - 188399 (-)
Type: CAZyme
Location: 186855 - 188399 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Propionibacteriales
Family
Propionibacteriaceae
Genus
Cutibacterium
Species
Cutibacterium avidum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.