Cluster: Rep_875_CGC13
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_875
- CGC Family ID: CGCFAM_08471
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_875_c_1 | Rep_875_c_1_259 | 271836 | 273773 | + | 9.B.62.3.2 |
| TC | Rep_875_c_1 | Rep_875_c_1_260 | 273770 | 276013 | + | 3.A.3.5.31 |
| pfam | Rep_875_c_1 | Rep_875_c_1_261 | 276000 | 277016 | + | Radical_SAM |
| pfam | Rep_875_c_1 | Rep_875_c_1_262 | 277162 | 277932 | + | DUF4191 |
| TC | Rep_875_c_1 | Rep_875_c_1_263 | 277940 | 279742 | + | 3.A.1.120.6 |
| CAZyme | Rep_875_c_1 | Rep_875_c_1_264 | 279739 | 280971 | + | GT87 |
| TC | Rep_875_c_1 | Rep_875_c_1_265 | 280950 | 281402 | - | 4.A.1.1.1 |
| TC | Rep_875_c_1 | Rep_875_c_1_266 | 281402 | 281632 | - | 4.A.1.1.5 |
| pfam | Rep_875_c_1 | Rep_875_c_1_267 | 281779 | 282027 | - | PTS_EIIB |
| TF | Rep_875_c_1 | Rep_875_c_1_268 | 282024 | 282749 | - | GntR |
| TC | Rep_875_c_1 | Rep_875_c_1_269 | 282964 | 284352 | + | 4.A.1.1.5 |
| pfam | Rep_875_c_1 | Rep_875_c_1_270 | 284423 | 285031 | - | VTT_dom |
| CAZyme | Rep_875_c_1 | Rep_875_c_1_271 | 285055 | 286158 | - | GT4 |
Gene ID: Rep_875_c_1_259
Type: TC
Location: 271836 - 273773 (+)
Type: TC
Location: 271836 - 273773 (+)
Gene ID: Rep_875_c_1_260
Type: TC
Location: 273770 - 276013 (+)
Type: TC
Location: 273770 - 276013 (+)
Gene ID: Rep_875_c_1_261
Type: pfam
Location: 276000 - 277016 (+)
Type: pfam
Location: 276000 - 277016 (+)
Gene ID: Rep_875_c_1_262
Type: pfam
Location: 277162 - 277932 (+)
Type: pfam
Location: 277162 - 277932 (+)
Gene ID: Rep_875_c_1_263
Type: TC
Location: 277940 - 279742 (+)
Type: TC
Location: 277940 - 279742 (+)
Gene ID: Rep_875_c_1_264
Type: CAZyme
Location: 279739 - 280971 (+)
Type: CAZyme
Location: 279739 - 280971 (+)
Gene ID: Rep_875_c_1_265
Type: TC
Location: 280950 - 281402 (-)
Type: TC
Location: 280950 - 281402 (-)
Gene ID: Rep_875_c_1_266
Type: TC
Location: 281402 - 281632 (-)
Type: TC
Location: 281402 - 281632 (-)
Gene ID: Rep_875_c_1_267
Type: pfam
Location: 281779 - 282027 (-)
Type: pfam
Location: 281779 - 282027 (-)
Gene ID: Rep_875_c_1_268
Type: TF
Location: 282024 - 282749 (-)
Type: TF
Location: 282024 - 282749 (-)
Gene ID: Rep_875_c_1_269
Type: TC
Location: 282964 - 284352 (+)
Type: TC
Location: 282964 - 284352 (+)
Gene ID: Rep_875_c_1_270
Type: pfam
Location: 284423 - 285031 (-)
Type: pfam
Location: 284423 - 285031 (-)
Gene ID: Rep_875_c_1_271
Type: CAZyme
Location: 285055 - 286158 (-)
Type: CAZyme
Location: 285055 - 286158 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Propionibacteriales
Family
Propionibacteriaceae
Genus
Cutibacterium
Species
Cutibacterium avidum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.