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Cluster: Rep_86_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_86_c_59 Rep_86_c_59_38 42799 45087 + 1.B.14.14.1
TC Rep_86_c_59 Rep_86_c_59_39 45134 45691 + 4.B.1.1.4
pfam Rep_86_c_59 Rep_86_c_59_40 45706 46392 + TPK_catalytic | Thi_PPkinase_C
CAZyme Rep_86_c_59 Rep_86_c_59_41 46527 48719 + GH36
STP Rep_86_c_59 Rep_86_c_59_42 48797 49279 - Response_reg
pfam Rep_86_c_59 Rep_86_c_59_43 49688 51088 + Lyase_1 | FumaraseC_C
TC Rep_86_c_59 Rep_86_c_59_44 51192 52544 + 2.A.66.1.4
pfam Rep_86_c_59 Rep_86_c_59_45 52703 54058 + Mfa2
NULL(UNKNOWN) Rep_86_c_59 Rep_86_c_59_46 54340 55086 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_86_c_59 Rep_86_c_59_47 55188 55709 - GH108
Gene ID: Rep_86_c_59_38
Type: TC
Location: 42799 - 45087 (+)
Gene ID: Rep_86_c_59_39
Type: TC
Location: 45134 - 45691 (+)
Gene ID: Rep_86_c_59_40
Type: pfam
Location: 45706 - 46392 (+)
Gene ID: Rep_86_c_59_41
Type: CAZyme
Location: 46527 - 48719 (+)
Gene ID: Rep_86_c_59_42
Type: STP
Location: 48797 - 49279 (-)
Gene ID: Rep_86_c_59_43
Type: pfam
Location: 49688 - 51088 (+)
Gene ID: Rep_86_c_59_44
Type: TC
Location: 51192 - 52544 (+)
Gene ID: Rep_86_c_59_45
Type: pfam
Location: 52703 - 54058 (+)
Gene ID: Rep_86_c_59_46
Type:
Location: 54340 - 55086 (-)
Gene ID: Rep_86_c_59_47
Type: CAZyme
Location: 55188 - 55709 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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