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Cluster: Rep_86_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_86_c_47 Rep_86_c_47_34 40456 42381 - 1.A.33.1.2
STP Rep_86_c_47 Rep_86_c_47_35 42752 45799 + TPR_1
pfam Rep_86_c_47 Rep_86_c_47_36 45790 46560 + Methyltransf_12 | Methyltransf_23
CAZyme Rep_86_c_47 Rep_86_c_47_37 46536 47267 + GT2
STP Rep_86_c_47 Rep_86_c_47_38 47388 48665 + PALP
TC Rep_86_c_47 Rep_86_c_47_39 48999 50294 + 9.B.126.2.1
pfam Rep_86_c_47 Rep_86_c_47_40 50380 50757 + START_2
TC Rep_86_c_47 Rep_86_c_47_41 50880 52331 + 1.B.42.1.13
Gene ID: Rep_86_c_47_34
Type: TC
Location: 40456 - 42381 (-)
Gene ID: Rep_86_c_47_35
Type: STP
Location: 42752 - 45799 (+)
Gene ID: Rep_86_c_47_36
Type: pfam
Location: 45790 - 46560 (+)
Gene ID: Rep_86_c_47_37
Type: CAZyme
Location: 46536 - 47267 (+)
Gene ID: Rep_86_c_47_38
Type: STP
Location: 47388 - 48665 (+)
Gene ID: Rep_86_c_47_39
Type: TC
Location: 48999 - 50294 (+)
Gene ID: Rep_86_c_47_40
Type: pfam
Location: 50380 - 50757 (+)
Gene ID: Rep_86_c_47_41
Type: TC
Location: 50880 - 52331 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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