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Cluster: Rep_86_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_86_c_27 Rep_86_c_27_28 27104 28423 - GH13
CAZyme Rep_86_c_27 Rep_86_c_27_29 28492 30369 - GH13_46
CAZyme Rep_86_c_27 Rep_86_c_27_30 30427 32733 - GH65
pfam Rep_86_c_27 Rep_86_c_27_31 32780 33445 - Hydrolase | HAD_2
TC Rep_86_c_27 Rep_86_c_27_32 33462 34820 - 2.A.2.6.2
CAZyme Rep_86_c_27 Rep_86_c_27_33 35255 36625 - GH13
CAZyme Rep_86_c_27 Rep_86_c_27_34 36685 39027 - GH13_45
TC Rep_86_c_27 Rep_86_c_27_35 39471 42443 + 1.B.14.6.1
TC Rep_86_c_27 Rep_86_c_27_36 42469 44064 + 8.A.46.1.6
Gene ID: Rep_86_c_27_28
Type: CAZyme
Location: 27104 - 28423 (-)
Gene ID: Rep_86_c_27_29
Type: CAZyme
Location: 28492 - 30369 (-)
Gene ID: Rep_86_c_27_30
Type: CAZyme
Location: 30427 - 32733 (-)
Gene ID: Rep_86_c_27_31
Type: pfam
Location: 32780 - 33445 (-)
Gene ID: Rep_86_c_27_32
Type: TC
Location: 33462 - 34820 (-)
Gene ID: Rep_86_c_27_33
Type: CAZyme
Location: 35255 - 36625 (-)
Gene ID: Rep_86_c_27_34
Type: CAZyme
Location: 36685 - 39027 (-)
Gene ID: Rep_86_c_27_35
Type: TC
Location: 39471 - 42443 (+)
Gene ID: Rep_86_c_27_36
Type: TC
Location: 42469 - 44064 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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