Cluster: Rep_866_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_866
- CGC Family ID: CGCFAM_03685
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_866_c_2 | Rep_866_c_2_8 | 3944 | 5380 | + | 2.A.23.1.9 |
| pfam | Rep_866_c_2 | Rep_866_c_2_9 | 5402 | 5797 | + | LMWPc |
| TC | Rep_866_c_2 | Rep_866_c_2_10 | 5851 | 6648 | + | 3.A.1.147.3 |
| NULL(UNKNOWN) | Rep_866_c_2 | Rep_866_c_2_11 | 6655 | 8265 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_866_c_2 | Rep_866_c_2_12 | 8262 | 10382 | - | CBM48 | GH13_9 |
| CAZyme | Rep_866_c_2 | Rep_866_c_2_13 | 10417 | 12384 | - | GH13_3 |
| TC | Rep_866_c_2 | Rep_866_c_2_14 | 12476 | 13276 | + | 3.A.1.105.8 |
Gene ID: Rep_866_c_2_8
Type: TC
Location: 3944 - 5380 (+)
Type: TC
Location: 3944 - 5380 (+)
Gene ID: Rep_866_c_2_9
Type: pfam
Location: 5402 - 5797 (+)
Type: pfam
Location: 5402 - 5797 (+)
Gene ID: Rep_866_c_2_10
Type: TC
Location: 5851 - 6648 (+)
Type: TC
Location: 5851 - 6648 (+)
Gene ID: Rep_866_c_2_11
Type:
Location: 6655 - 8265 (+)
Type:
Location: 6655 - 8265 (+)
Gene ID: Rep_866_c_2_12
Type: CAZyme
Location: 8262 - 10382 (-)
Type: CAZyme
Location: 8262 - 10382 (-)
Gene ID: Rep_866_c_2_13
Type: CAZyme
Location: 10417 - 12384 (-)
Type: CAZyme
Location: 10417 - 12384 (-)
Gene ID: Rep_866_c_2_14
Type: TC
Location: 12476 - 13276 (+)
Type: TC
Location: 12476 - 13276 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Species
Corynebacterium simulans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.