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Cluster: Rep_863_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_863_c_9 Rep_863_c_9_2 572 1900 + 2.A.1.3.25
pfam Rep_863_c_9 Rep_863_c_9_3 1923 2954 + PFK
TC Rep_863_c_9 Rep_863_c_9_4 2994 4592 + 2.A.81.1.3
pfam Rep_863_c_9 Rep_863_c_9_5 4636 6141 + GatB_Yqey | GatB_N
pfam Rep_863_c_9 Rep_863_c_9_6 6188 7252 + ADH_zinc_N | ADH_N
TC Rep_863_c_9 Rep_863_c_9_7 7438 8862 + 2.A.120.1.1
TC Rep_863_c_9 Rep_863_c_9_8 8859 9548 - 2.A.75.1.1
TF Rep_863_c_9 Rep_863_c_9_9 9619 10503 + HTH_1
pfam Rep_863_c_9 Rep_863_c_9_10 10532 11533 + DoxX
CAZyme Rep_863_c_9 Rep_863_c_9_11 11671 12939 - GT87
Gene ID: Rep_863_c_9_2
Type: TC
Location: 572 - 1900 (+)
Gene ID: Rep_863_c_9_3
Type: pfam
Location: 1923 - 2954 (+)
Gene ID: Rep_863_c_9_4
Type: TC
Location: 2994 - 4592 (+)
Gene ID: Rep_863_c_9_5
Type: pfam
Location: 4636 - 6141 (+)
Gene ID: Rep_863_c_9_6
Type: pfam
Location: 6188 - 7252 (+)
Gene ID: Rep_863_c_9_7
Type: TC
Location: 7438 - 8862 (+)
Gene ID: Rep_863_c_9_8
Type: TC
Location: 8859 - 9548 (-)
Gene ID: Rep_863_c_9_9
Type: TF
Location: 9619 - 10503 (+)
Gene ID: Rep_863_c_9_10
Type: pfam
Location: 10532 - 11533 (+)
Gene ID: Rep_863_c_9_11
Type: CAZyme
Location: 11671 - 12939 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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