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Cluster: Rep_855_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_855_c_4 Rep_855_c_4_1 159 1523 - 2.A.8.1.3
pfam Rep_855_c_4 Rep_855_c_4_2 1639 3048 + UxaC
pfam Rep_855_c_4 Rep_855_c_4_3 3045 4232 + Mannitol_dh | Mannitol_dh_C
CAZyme Rep_855_c_4 Rep_855_c_4_4 4225 5946 + GH2
TC Rep_855_c_4 Rep_855_c_4_5 5933 7957 + 2.A.2.3.1
TF Rep_855_c_4 Rep_855_c_4_6 8041 8745 - Trans_reg_C
STP Rep_855_c_4 Rep_855_c_4_7 8746 11307 - HATPase_c | HisKA
TC Rep_855_c_4 Rep_855_c_4_8 11312 11890 - 3.A.3.7.1
NULL(UNKNOWN) Rep_855_c_4 Rep_855_c_4_9 11872 12072 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_855_c_4 Rep_855_c_4_10 12088 14154 - 3.A.3.7.1
TC Rep_855_c_4 Rep_855_c_4_11 14151 15893 - 3.A.3.7.2
Gene ID: Rep_855_c_4_1
Type: TC
Location: 159 - 1523 (-)
Gene ID: Rep_855_c_4_2
Type: pfam
Location: 1639 - 3048 (+)
Gene ID: Rep_855_c_4_3
Type: pfam
Location: 3045 - 4232 (+)
Gene ID: Rep_855_c_4_4
Type: CAZyme
Location: 4225 - 5946 (+)
Gene ID: Rep_855_c_4_5
Type: TC
Location: 5933 - 7957 (+)
Gene ID: Rep_855_c_4_6
Type: TF
Location: 8041 - 8745 (-)
Gene ID: Rep_855_c_4_7
Type: STP
Location: 8746 - 11307 (-)
Gene ID: Rep_855_c_4_8
Type: TC
Location: 11312 - 11890 (-)
Gene ID: Rep_855_c_4_9
Type:
Location: 11872 - 12072 (-)
Gene ID: Rep_855_c_4_10
Type: TC
Location: 12088 - 14154 (-)
Gene ID: Rep_855_c_4_11
Type: TC
Location: 14151 - 15893 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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