Cluster: Rep_850_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_850
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_850_c_1 | Rep_850_c_1_2 | 825 | 1784 | - | GT8 |
| pfam | Rep_850_c_1 | Rep_850_c_1_3 | 2054 | 4951 | - | Collagen_bind | Cna_B | Cna_B | Cna_B | Cna_B | Cna_B | SpaA | Big_8 |
| NULL(UNKNOWN) | Rep_850_c_1 | Rep_850_c_1_4 | 5682 | 5849 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_850_c_1 | Rep_850_c_1_5 | 5941 | 6915 | + | 3.A.1.147.3 |
| NULL(UNKNOWN) | Rep_850_c_1 | Rep_850_c_1_6 | 6926 | 8587 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_850_c_1 | Rep_850_c_1_7 | 8737 | 10836 | - | 3.A.3.25.3 |
Gene ID: Rep_850_c_1_2
Type: CAZyme
Location: 825 - 1784 (-)
Type: CAZyme
Location: 825 - 1784 (-)
Gene ID: Rep_850_c_1_3
Type: pfam
Location: 2054 - 4951 (-)
Type: pfam
Location: 2054 - 4951 (-)
Gene ID: Rep_850_c_1_4
Type:
Location: 5682 - 5849 (-)
Type:
Location: 5682 - 5849 (-)
Gene ID: Rep_850_c_1_5
Type: TC
Location: 5941 - 6915 (+)
Type: TC
Location: 5941 - 6915 (+)
Gene ID: Rep_850_c_1_6
Type:
Location: 6926 - 8587 (+)
Type:
Location: 6926 - 8587 (+)
Gene ID: Rep_850_c_1_7
Type: TC
Location: 8737 - 10836 (-)
Type: TC
Location: 8737 - 10836 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia wiggsiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.