Cluster: Rep_850_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_850
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_850_c_0 | Rep_850_c_0_230 | 270896 | 272098 | - | GT28 |
| TC | Rep_850_c_0 | Rep_850_c_0_231 | 272169 | 273518 | - | 2.A.103.1.4 |
| pfam | Rep_850_c_0 | Rep_850_c_0_232 | 273515 | 274996 | - | Mur_ligase_C | Mur_ligase_M |
| TC | Rep_850_c_0 | Rep_850_c_0_233 | 275039 | 276169 | - | 9.B.146.1.6 |
Gene ID: Rep_850_c_0_230
Type: CAZyme
Location: 270896 - 272098 (-)
Type: CAZyme
Location: 270896 - 272098 (-)
Gene ID: Rep_850_c_0_231
Type: TC
Location: 272169 - 273518 (-)
Type: TC
Location: 272169 - 273518 (-)
Gene ID: Rep_850_c_0_232
Type: pfam
Location: 273515 - 274996 (-)
Type: pfam
Location: 273515 - 274996 (-)
Gene ID: Rep_850_c_0_233
Type: TC
Location: 275039 - 276169 (-)
Type: TC
Location: 275039 - 276169 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia wiggsiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.