Cluster: Rep_850_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_850
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_850_c_3 | Rep_850_c_3_55 | 77349 | 78494 | + | GH5_44 | GH5_44 |
| peptidase | Rep_850_c_3 | Rep_850_c_3_56 | 78901 | 80217 | + | C01.086 |
| TC | Rep_850_c_3 | Rep_850_c_3_57 | 80241 | 84041 | - | 3.A.1.201.14 |
| TC | Rep_850_c_3 | Rep_850_c_3_58 | 84407 | 85276 | + | 3.A.1.125.3 |
| TC | Rep_850_c_3 | Rep_850_c_3_59 | 85295 | 88264 | + | 3.A.1.125.3 |
Gene ID: Rep_850_c_3_55
Type: CAZyme
Location: 77349 - 78494 (+)
Type: CAZyme
Location: 77349 - 78494 (+)
Gene ID: Rep_850_c_3_56
Type: peptidase
Location: 78901 - 80217 (+)
Type: peptidase
Location: 78901 - 80217 (+)
Gene ID: Rep_850_c_3_57
Type: TC
Location: 80241 - 84041 (-)
Type: TC
Location: 80241 - 84041 (-)
Gene ID: Rep_850_c_3_58
Type: TC
Location: 84407 - 85276 (+)
Type: TC
Location: 84407 - 85276 (+)
Gene ID: Rep_850_c_3_59
Type: TC
Location: 85295 - 88264 (+)
Type: TC
Location: 85295 - 88264 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia wiggsiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.