Cluster: Rep_850_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_850
- CGC Family ID: CGCFAM_01882
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_850_c_2 | Rep_850_c_2_105 | 125941 | 126876 | - | 1.C.113.1.6 |
| STP | Rep_850_c_2 | Rep_850_c_2_106 | 126981 | 128486 | + | HATPase_c |
| TF | Rep_850_c_2 | Rep_850_c_2_107 | 128529 | 128798 | - | Whib |
| TC | Rep_850_c_2 | Rep_850_c_2_108 | 128888 | 131044 | - | 3.A.7.17.1 |
| pfam | Rep_850_c_2 | Rep_850_c_2_109 | 131150 | 132571 | - | LytR_cpsA_psr |
| pfam | Rep_850_c_2 | Rep_850_c_2_110 | 132598 | 134031 | - | LytR_cpsA_psr |
| CAZyme | Rep_850_c_2 | Rep_850_c_2_111 | 134269 | 137466 | + | GT2 |
Gene ID: Rep_850_c_2_105
Type: TC
Location: 125941 - 126876 (-)
Type: TC
Location: 125941 - 126876 (-)
Gene ID: Rep_850_c_2_106
Type: STP
Location: 126981 - 128486 (+)
Type: STP
Location: 126981 - 128486 (+)
Gene ID: Rep_850_c_2_107
Type: TF
Location: 128529 - 128798 (-)
Type: TF
Location: 128529 - 128798 (-)
Gene ID: Rep_850_c_2_108
Type: TC
Location: 128888 - 131044 (-)
Type: TC
Location: 128888 - 131044 (-)
Gene ID: Rep_850_c_2_109
Type: pfam
Location: 131150 - 132571 (-)
Type: pfam
Location: 131150 - 132571 (-)
Gene ID: Rep_850_c_2_110
Type: pfam
Location: 132598 - 134031 (-)
Type: pfam
Location: 132598 - 134031 (-)
Gene ID: Rep_850_c_2_111
Type: CAZyme
Location: 134269 - 137466 (+)
Type: CAZyme
Location: 134269 - 137466 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia wiggsiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.