Cluster: Rep_850_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_850
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_850_c_2 | Rep_850_c_2_20 | 16247 | 17146 | - | GT2 |
| pfam | Rep_850_c_2 | Rep_850_c_2_21 | 17179 | 18987 | + | AI-2E_transport |
| CAZyme | Rep_850_c_2 | Rep_850_c_2_22 | 18987 | 20237 | + | GT2 |
| pfam | Rep_850_c_2 | Rep_850_c_2_23 | 20244 | 21509 | + | ATP_bind_3 |
| STP | Rep_850_c_2 | Rep_850_c_2_24 | 21567 | 22133 | + | Pribosyltran |
| TC | Rep_850_c_2 | Rep_850_c_2_25 | 22130 | 24709 | + | 3.A.16.1.2 |
Gene ID: Rep_850_c_2_20
Type: CAZyme
Location: 16247 - 17146 (-)
Type: CAZyme
Location: 16247 - 17146 (-)
Gene ID: Rep_850_c_2_21
Type: pfam
Location: 17179 - 18987 (+)
Type: pfam
Location: 17179 - 18987 (+)
Gene ID: Rep_850_c_2_22
Type: CAZyme
Location: 18987 - 20237 (+)
Type: CAZyme
Location: 18987 - 20237 (+)
Gene ID: Rep_850_c_2_23
Type: pfam
Location: 20244 - 21509 (+)
Type: pfam
Location: 20244 - 21509 (+)
Gene ID: Rep_850_c_2_24
Type: STP
Location: 21567 - 22133 (+)
Type: STP
Location: 21567 - 22133 (+)
Gene ID: Rep_850_c_2_25
Type: TC
Location: 22130 - 24709 (+)
Type: TC
Location: 22130 - 24709 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia wiggsiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.