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Cluster: Rep_84_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_84_c_0 Rep_84_c_0_476 567617 570796 + GH31_18
TC Rep_84_c_0 Rep_84_c_0_477 570922 571518 + 1.B.44.2.1
pfam Rep_84_c_0 Rep_84_c_0_478 572004 572576 - Adenine_glyco
pfam Rep_84_c_0 Rep_84_c_0_479 572953 573549 + OMP_b-brl | OMP_b-brl_2
CAZyme Rep_84_c_0 Rep_84_c_0_480 573770 575068 + GH29
TC Rep_84_c_0 Rep_84_c_0_481 575421 575849 - 1.A.22.1.1
pfam Rep_84_c_0 Rep_84_c_0_482 575860 576903 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
pfam Rep_84_c_0 Rep_84_c_0_483 577110 577883 + Acyl-ACP_TE | Acyl-ACP_TE_C
CAZyme Rep_84_c_0 Rep_84_c_0_484 578041 578991 - GT2
pfam Rep_84_c_0 Rep_84_c_0_485 579039 579566 - DUF4199
CAZyme Rep_84_c_0 Rep_84_c_0_486 579596 580423 - GH73
Gene ID: Rep_84_c_0_476
Type: CAZyme
Location: 567617 - 570796 (+)
Gene ID: Rep_84_c_0_477
Type: TC
Location: 570922 - 571518 (+)
Gene ID: Rep_84_c_0_478
Type: pfam
Location: 572004 - 572576 (-)
Gene ID: Rep_84_c_0_479
Type: pfam
Location: 572953 - 573549 (+)
Gene ID: Rep_84_c_0_480
Type: CAZyme
Location: 573770 - 575068 (+)
Gene ID: Rep_84_c_0_481
Type: TC
Location: 575421 - 575849 (-)
Gene ID: Rep_84_c_0_482
Type: pfam
Location: 575860 - 576903 (-)
Gene ID: Rep_84_c_0_483
Type: pfam
Location: 577110 - 577883 (+)
Gene ID: Rep_84_c_0_484
Type: CAZyme
Location: 578041 - 578991 (-)
Gene ID: Rep_84_c_0_485
Type: pfam
Location: 579039 - 579566 (-)
Gene ID: Rep_84_c_0_486
Type: CAZyme
Location: 579596 - 580423 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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