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Cluster: Rep_847_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_847_c_0 Rep_847_c_0_265 305789 308881 - GT2
TF Rep_847_c_0 Rep_847_c_0_266 308927 309226 - Whib
pfam Rep_847_c_0 Rep_847_c_0_267 309487 310821 + LytR_cpsA_psr
TC Rep_847_c_0 Rep_847_c_0_268 311025 312743 + 3.A.7.17.1
TF Rep_847_c_0 Rep_847_c_0_269 312858 313136 + Whib
STP Rep_847_c_0 Rep_847_c_0_270 313196 314683 - HATPase_c
TC Rep_847_c_0 Rep_847_c_0_271 314846 315790 + 1.C.113.1.4
Gene ID: Rep_847_c_0_265
Type: CAZyme
Location: 305789 - 308881 (-)
Gene ID: Rep_847_c_0_266
Type: TF
Location: 308927 - 309226 (-)
Gene ID: Rep_847_c_0_267
Type: pfam
Location: 309487 - 310821 (+)
Gene ID: Rep_847_c_0_268
Type: TC
Location: 311025 - 312743 (+)
Gene ID: Rep_847_c_0_269
Type: TF
Location: 312858 - 313136 (+)
Gene ID: Rep_847_c_0_270
Type: STP
Location: 313196 - 314683 (-)
Gene ID: Rep_847_c_0_271
Type: TC
Location: 314846 - 315790 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_847_c_0_269 vegan > omnivore 1.42019 0.00973
Rep_847_c_0_269 vegetarian > omnivore 1.46223 0.00272

🧭 Explore Read Mapping of CGC

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