Cluster: Rep_847_CGC34
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_847
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_847_c_5 | Rep_847_c_5_109 | 105770 | 107068 | + | GH125 |
| pfam | Rep_847_c_5 | Rep_847_c_5_110 | 107135 | 108370 | + | GlcNAc_2-epim |
| TF | Rep_847_c_5 | Rep_847_c_5_111 | 108492 | 109619 | - | LacI |
| CAZyme | Rep_847_c_5 | Rep_847_c_5_112 | 109894 | 112677 | - | CBM32 | GH85 |
| CAZyme | Rep_847_c_5 | Rep_847_c_5_113 | 112755 | 115244 | - | GH31_15 |
| CAZyme | Rep_847_c_5 | Rep_847_c_5_114 | 115522 | 116811 | - | GH5_18 |
| TC | Rep_847_c_5 | Rep_847_c_5_115 | 116825 | 117682 | - | 3.A.1.1.20 |
| TC | Rep_847_c_5 | Rep_847_c_5_116 | 117682 | 118620 | - | 3.A.1.1.6 |
| TC | Rep_847_c_5 | Rep_847_c_5_117 | 118623 | 119894 | - | 3.A.1.1.40 |
| CAZyme | Rep_847_c_5 | Rep_847_c_5_118 | 120090 | 123194 | - | GH38 |
| CAZyme | Rep_847_c_5 | Rep_847_c_5_119 | 123464 | 125776 | - | GH38 |
Gene ID: Rep_847_c_5_109
Type: CAZyme
Location: 105770 - 107068 (+)
Type: CAZyme
Location: 105770 - 107068 (+)
Gene ID: Rep_847_c_5_110
Type: pfam
Location: 107135 - 108370 (+)
Type: pfam
Location: 107135 - 108370 (+)
Gene ID: Rep_847_c_5_111
Type: TF
Location: 108492 - 109619 (-)
Type: TF
Location: 108492 - 109619 (-)
Gene ID: Rep_847_c_5_112
Type: CAZyme
Location: 109894 - 112677 (-)
Type: CAZyme
Location: 109894 - 112677 (-)
Gene ID: Rep_847_c_5_113
Type: CAZyme
Location: 112755 - 115244 (-)
Type: CAZyme
Location: 112755 - 115244 (-)
Gene ID: Rep_847_c_5_114
Type: CAZyme
Location: 115522 - 116811 (-)
Type: CAZyme
Location: 115522 - 116811 (-)
Gene ID: Rep_847_c_5_115
Type: TC
Location: 116825 - 117682 (-)
Type: TC
Location: 116825 - 117682 (-)
Gene ID: Rep_847_c_5_116
Type: TC
Location: 117682 - 118620 (-)
Type: TC
Location: 117682 - 118620 (-)
Gene ID: Rep_847_c_5_117
Type: TC
Location: 118623 - 119894 (-)
Type: TC
Location: 118623 - 119894 (-)
Gene ID: Rep_847_c_5_118
Type: CAZyme
Location: 120090 - 123194 (-)
Type: CAZyme
Location: 120090 - 123194 (-)
Gene ID: Rep_847_c_5_119
Type: CAZyme
Location: 123464 - 125776 (-)
Type: CAZyme
Location: 123464 - 125776 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium breve
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_847_c_5_109 | vegetarian > omnivore | 1.80189 | 0.00272 |
| Rep_847_c_5_110 | vegetarian > omnivore | 1.72996 | 0.00272 |
| Rep_847_c_5_119 | vegetarian > omnivore | 1.63953 | 0.00272 |
| Rep_847_c_5_119 | vegetarian > vegan | 1.09008 | 0.04772 |