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Cluster: Rep_847_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_847_c_2 Rep_847_c_2_197 260321 262525 - GH77
CAZyme Rep_847_c_2 Rep_847_c_2_198 262779 264665 - GH13_44
pfam Rep_847_c_2 Rep_847_c_2_199 264922 266163 + SBP_bac_1 | SBP_bac_8
TC Rep_847_c_2 Rep_847_c_2_200 266506 267909 + 3.A.1.1.27
TC Rep_847_c_2 Rep_847_c_2_201 267906 268826 + 3.A.1.1.27
pfam Rep_847_c_2 Rep_847_c_2_202 269011 269814 + TraX
TF Rep_847_c_2 Rep_847_c_2_203 269815 270840 - LacI
CAZyme Rep_847_c_2 Rep_847_c_2_204 271157 276283 + CBM25 | CBM41 | GH13_14 | GH13_32
TC Rep_847_c_2 Rep_847_c_2_205 276530 278410 + 1.A.33.1.4
Gene ID: Rep_847_c_2_197
Type: CAZyme
Location: 260321 - 262525 (-)
Gene ID: Rep_847_c_2_198
Type: CAZyme
Location: 262779 - 264665 (-)
Gene ID: Rep_847_c_2_199
Type: pfam
Location: 264922 - 266163 (+)
Gene ID: Rep_847_c_2_200
Type: TC
Location: 266506 - 267909 (+)
Gene ID: Rep_847_c_2_201
Type: TC
Location: 267906 - 268826 (+)
Gene ID: Rep_847_c_2_202
Type: pfam
Location: 269011 - 269814 (+)
Gene ID: Rep_847_c_2_203
Type: TF
Location: 269815 - 270840 (-)
Gene ID: Rep_847_c_2_204
Type: CAZyme
Location: 271157 - 276283 (+)
Gene ID: Rep_847_c_2_205
Type: TC
Location: 276530 - 278410 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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