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Cluster: Rep_847_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_847_c_2 Rep_847_c_2_3 2936 4762 - GH13_31
TC Rep_847_c_2 Rep_847_c_2_4 5534 6400 - 3.A.1.1.28
TC Rep_847_c_2 Rep_847_c_2_5 6419 7369 - 3.A.1.1.28
STP Rep_847_c_2 Rep_847_c_2_6 7391 8680 - SBP_bac_1
pfam Rep_847_c_2 Rep_847_c_2_7 8854 10062 + ROK
CAZyme Rep_847_c_2 Rep_847_c_2_8 10175 12490 - GH36
pfam Rep_847_c_2 Rep_847_c_2_9 12607 13041 - dCMP_cyt_deam_1 | MafB19-deam
TC Rep_847_c_2 Rep_847_c_2_10 13492 15564 + 2.A.36.3.2
TC Rep_847_c_2 Rep_847_c_2_11 15604 16407 - 2.A.102.4.5
Gene ID: Rep_847_c_2_3
Type: CAZyme
Location: 2936 - 4762 (-)
Gene ID: Rep_847_c_2_4
Type: TC
Location: 5534 - 6400 (-)
Gene ID: Rep_847_c_2_5
Type: TC
Location: 6419 - 7369 (-)
Gene ID: Rep_847_c_2_6
Type: STP
Location: 7391 - 8680 (-)
Gene ID: Rep_847_c_2_7
Type: pfam
Location: 8854 - 10062 (+)
Gene ID: Rep_847_c_2_8
Type: CAZyme
Location: 10175 - 12490 (-)
Gene ID: Rep_847_c_2_9
Type: pfam
Location: 12607 - 13041 (-)
Gene ID: Rep_847_c_2_10
Type: TC
Location: 13492 - 15564 (+)
Gene ID: Rep_847_c_2_11
Type: TC
Location: 15604 - 16407 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_847_c_2_9 vegetarian > omnivore 1.13364 0.00272

🧭 Explore Read Mapping of CGC

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