Cluster: Rep_847_CGC19
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_847
- CGC Family ID: CGCFAM_00391
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_847_c_1 | Rep_847_c_1_389 | 476920 | 479193 | + | GH3 |
| TF | Rep_847_c_1 | Rep_847_c_1_390 | 479404 | 479937 | + | MarR |
| TC | Rep_847_c_1 | Rep_847_c_1_391 | 479934 | 481892 | + | 3.A.1.135.5 |
| TC | Rep_847_c_1 | Rep_847_c_1_392 | 481889 | 483904 | + | 3.A.1.135.8 |
| TF | Rep_847_c_1 | Rep_847_c_1_393 | 484011 | 485912 | - | LacI |
| TC | Rep_847_c_1 | Rep_847_c_1_394 | 486169 | 486822 | + | 3.A.1.28.1 |
| TC | Rep_847_c_1 | Rep_847_c_1_395 | 486826 | 487638 | + | 3.A.1.33.1 |
| TC | Rep_847_c_1 | Rep_847_c_1_396 | 487639 | 488469 | + | 3.A.1.26.5 |
| TC | Rep_847_c_1 | Rep_847_c_1_397 | 488466 | 489281 | + | 3.A.1.33.1 |
Gene ID: Rep_847_c_1_389
Type: CAZyme
Location: 476920 - 479193 (+)
Type: CAZyme
Location: 476920 - 479193 (+)
Gene ID: Rep_847_c_1_390
Type: TF
Location: 479404 - 479937 (+)
Type: TF
Location: 479404 - 479937 (+)
Gene ID: Rep_847_c_1_391
Type: TC
Location: 479934 - 481892 (+)
Type: TC
Location: 479934 - 481892 (+)
Gene ID: Rep_847_c_1_392
Type: TC
Location: 481889 - 483904 (+)
Type: TC
Location: 481889 - 483904 (+)
Gene ID: Rep_847_c_1_393
Type: TF
Location: 484011 - 485912 (-)
Type: TF
Location: 484011 - 485912 (-)
Gene ID: Rep_847_c_1_394
Type: TC
Location: 486169 - 486822 (+)
Type: TC
Location: 486169 - 486822 (+)
Gene ID: Rep_847_c_1_395
Type: TC
Location: 486826 - 487638 (+)
Type: TC
Location: 486826 - 487638 (+)
Gene ID: Rep_847_c_1_396
Type: TC
Location: 487639 - 488469 (+)
Type: TC
Location: 487639 - 488469 (+)
Gene ID: Rep_847_c_1_397
Type: TC
Location: 488466 - 489281 (+)
Type: TC
Location: 488466 - 489281 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium breve
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_847_c_1_393 | vegan > omnivore | 2.43574 | 0.01052 |
| Rep_847_c_1_393 | vegetarian > omnivore | 2.94994 | 0.00272 |
| Rep_847_c_1_394 | vegan > omnivore | 2.98409 | 0.01052 |
| Rep_847_c_1_394 | vegetarian > omnivore | 2.86764 | 0.00272 |
| Rep_847_c_1_395 | vegan > omnivore | 1.94329 | 0.01052 |
| Rep_847_c_1_395 | vegetarian > omnivore | 2.39246 | 0.00272 |
| Rep_847_c_1_396 | vegan > omnivore | 1.23754 | 0.01052 |
| Rep_847_c_1_396 | vegetarian > omnivore | 1.11882 | 0.00272 |
| Rep_847_c_1_397 | vegan > omnivore | 1.72318 | 0.01052 |
| Rep_847_c_1_397 | vegetarian > omnivore | 2.14882 | 0.00272 |