Cluster: Rep_847_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_847
- CGC Family ID: CGCFAM_00105
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_847_c_1 | Rep_847_c_1_49 | 70734 | 71957 | + | 3.A.1.103.4 |
| CAZyme | Rep_847_c_1 | Rep_847_c_1_50 | 71991 | 76091 | + | GT2 | GT2 | GT2 |
| pfam | Rep_847_c_1 | Rep_847_c_1_51 | 76135 | 78333 | - | Sulfatase |
| pfam | Rep_847_c_1 | Rep_847_c_1_52 | 78562 | 79908 | + | DUF2142 |
| CAZyme | Rep_847_c_1 | Rep_847_c_1_53 | 79939 | 80985 | - | GT2 |
Gene ID: Rep_847_c_1_49
Type: TC
Location: 70734 - 71957 (+)
Type: TC
Location: 70734 - 71957 (+)
Gene ID: Rep_847_c_1_50
Type: CAZyme
Location: 71991 - 76091 (+)
Type: CAZyme
Location: 71991 - 76091 (+)
Gene ID: Rep_847_c_1_51
Type: pfam
Location: 76135 - 78333 (-)
Type: pfam
Location: 76135 - 78333 (-)
Gene ID: Rep_847_c_1_52
Type: pfam
Location: 78562 - 79908 (+)
Type: pfam
Location: 78562 - 79908 (+)
Gene ID: Rep_847_c_1_53
Type: CAZyme
Location: 79939 - 80985 (-)
Type: CAZyme
Location: 79939 - 80985 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium breve
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_847_c_1_53 | vegan > omnivore | 1.74850 | 0.01052 |