Cluster: Rep_847_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_847
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_847_c_0 | Rep_847_c_0_539 | 638430 | 639413 | + | GH23 |
| NULL(UNKNOWN) | Rep_847_c_0 | Rep_847_c_0_540 | 639601 | 640977 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_847_c_0 | Rep_847_c_0_541 | 641175 | 642611 | - | 8.A.3.1.2 |
Gene ID: Rep_847_c_0_539
Type: CAZyme
Location: 638430 - 639413 (+)
Type: CAZyme
Location: 638430 - 639413 (+)
Gene ID: Rep_847_c_0_540
Type:
Location: 639601 - 640977 (-)
Type:
Location: 639601 - 640977 (-)
Gene ID: Rep_847_c_0_541
Type: TC
Location: 641175 - 642611 (-)
Type: TC
Location: 641175 - 642611 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium breve
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_847_c_0_539 | vegetarian > omnivore | 1.13302 | 0.00272 |
| Rep_847_c_0_540 | vegetarian > omnivore | 2.46388 | 0.00272 |
| Rep_847_c_0_541 | vegetarian > omnivore | 3.03527 | 0.00272 |