Cluster: Rep_836_CGC4
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_836
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_836_c_2 | Rep_836_c_2_34 | 34907 | 37024 | - | GH42 |
| TC | Rep_836_c_2 | Rep_836_c_2_35 | 37237 | 40845 | - | 3.A.1.106.12 |
| peptidase | Rep_836_c_2 | Rep_836_c_2_36 | 40984 | 41604 | - | C26.A32 |
| pfam | Rep_836_c_2 | Rep_836_c_2_37 | 41689 | 42564 | - | SOR_SNZ | ThiG |
| TC | Rep_836_c_2 | Rep_836_c_2_38 | 42853 | 44676 | + | 4.C.1.1.14 |
| NULL(UNKNOWN) | Rep_836_c_2 | Rep_836_c_2_39 | 44796 | 46313 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_836_c_2 | Rep_836_c_2_40 | 46524 | 48002 | - | 8.A.3.1.2 |
| NULL(UNKNOWN) | Rep_836_c_2 | Rep_836_c_2_41 | 48087 | 48518 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_836_c_2 | Rep_836_c_2_42 | 49141 | 53985 | + | CBM26 | CBM26 | GH13_28 |
| pfam | Rep_836_c_2 | Rep_836_c_2_43 | 54107 | 55282 | - | PS_pyruv_trans |
| CAZyme | Rep_836_c_2 | Rep_836_c_2_44 | 55341 | 56387 | - | GT2 |
| STP | Rep_836_c_2 | Rep_836_c_2_45 | 56390 | 57415 | - | Nitroreductase | Nitroreductase |
| CAZyme | Rep_836_c_2 | Rep_836_c_2_46 | 57422 | 58474 | - | GT113 |
| TC | Rep_836_c_2 | Rep_836_c_2_47 | 58485 | 59999 | - | 2.A.66.2.16 |
| NULL(UNKNOWN) | Rep_836_c_2 | Rep_836_c_2_48 | 59996 | 61402 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_836_c_2 | Rep_836_c_2_49 | 61418 | 62413 | - | GT2 |
| CAZyme | Rep_836_c_2 | Rep_836_c_2_50 | 62758 | 67413 | - | CBM26 | CBM74 | GH13_28 |
| CAZyme | Rep_836_c_2 | Rep_836_c_2_51 | 67867 | 68685 | - | GT111 |
| TC | Rep_836_c_2 | Rep_836_c_2_52 | 68724 | 70202 | - | 9.B.18.1.2 |
Gene ID: Rep_836_c_2_34
Type: CAZyme
Location: 34907 - 37024 (-)
Type: CAZyme
Location: 34907 - 37024 (-)
Gene ID: Rep_836_c_2_35
Type: TC
Location: 37237 - 40845 (-)
Type: TC
Location: 37237 - 40845 (-)
Gene ID: Rep_836_c_2_36
Type: peptidase
Location: 40984 - 41604 (-)
Type: peptidase
Location: 40984 - 41604 (-)
Gene ID: Rep_836_c_2_37
Type: pfam
Location: 41689 - 42564 (-)
Type: pfam
Location: 41689 - 42564 (-)
Gene ID: Rep_836_c_2_38
Type: TC
Location: 42853 - 44676 (+)
Type: TC
Location: 42853 - 44676 (+)
Gene ID: Rep_836_c_2_39
Type:
Location: 44796 - 46313 (-)
Type:
Location: 44796 - 46313 (-)
Gene ID: Rep_836_c_2_40
Type: TC
Location: 46524 - 48002 (-)
Type: TC
Location: 46524 - 48002 (-)
Gene ID: Rep_836_c_2_41
Type:
Location: 48087 - 48518 (-)
Type:
Location: 48087 - 48518 (-)
Gene ID: Rep_836_c_2_42
Type: CAZyme
Location: 49141 - 53985 (+)
Type: CAZyme
Location: 49141 - 53985 (+)
Gene ID: Rep_836_c_2_43
Type: pfam
Location: 54107 - 55282 (-)
Type: pfam
Location: 54107 - 55282 (-)
Gene ID: Rep_836_c_2_44
Type: CAZyme
Location: 55341 - 56387 (-)
Type: CAZyme
Location: 55341 - 56387 (-)
Gene ID: Rep_836_c_2_45
Type: STP
Location: 56390 - 57415 (-)
Type: STP
Location: 56390 - 57415 (-)
Gene ID: Rep_836_c_2_46
Type: CAZyme
Location: 57422 - 58474 (-)
Type: CAZyme
Location: 57422 - 58474 (-)
Gene ID: Rep_836_c_2_47
Type: TC
Location: 58485 - 59999 (-)
Type: TC
Location: 58485 - 59999 (-)
Gene ID: Rep_836_c_2_48
Type:
Location: 59996 - 61402 (-)
Type:
Location: 59996 - 61402 (-)
Gene ID: Rep_836_c_2_49
Type: CAZyme
Location: 61418 - 62413 (-)
Type: CAZyme
Location: 61418 - 62413 (-)
Gene ID: Rep_836_c_2_50
Type: CAZyme
Location: 62758 - 67413 (-)
Type: CAZyme
Location: 62758 - 67413 (-)
Gene ID: Rep_836_c_2_51
Type: CAZyme
Location: 67867 - 68685 (-)
Type: CAZyme
Location: 67867 - 68685 (-)
Gene ID: Rep_836_c_2_52
Type: TC
Location: 68724 - 70202 (-)
Type: TC
Location: 68724 - 70202 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium angulatum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.