Cluster: Rep_836_CGC3
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_836
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_836_c_1 | Rep_836_c_1_49 | 71086 | 72168 | + | GT2 |
| pfam | Rep_836_c_1 | Rep_836_c_1_50 | 72295 | 74373 | + | DUF6541 | DUF6541 |
| CAZyme | Rep_836_c_1 | Rep_836_c_1_51 | 74522 | 76093 | - | CE20 |
| CAZyme | Rep_836_c_1 | Rep_836_c_1_52 | 76303 | 78111 | + | GH25 |
| pfam | Rep_836_c_1 | Rep_836_c_1_53 | 78174 | 79613 | - | CHAP | Choline_bind_3 | Choline_bind_3 |
| CAZyme | Rep_836_c_1 | Rep_836_c_1_54 | 79721 | 80800 | + | GT2 |
| TC | Rep_836_c_1 | Rep_836_c_1_55 | 80844 | 82538 | + | 9.B.142.3.8 |
| pfam | Rep_836_c_1 | Rep_836_c_1_56 | 82541 | 84211 | + | Lipase_GDSL_2 | Choline_bind_3 |
| pfam | Rep_836_c_1 | Rep_836_c_1_57 | 84273 | 85340 | + | Acyl_transf_3 |
| TC | Rep_836_c_1 | Rep_836_c_1_58 | 85434 | 88652 | - | 8.A.43.1.3 |
| pfam | Rep_836_c_1 | Rep_836_c_1_59 | 89052 | 92531 | + | SLH | Big_4 | Big_4 | Flg_new |
| pfam | Rep_836_c_1 | Rep_836_c_1_60 | 92683 | 94479 | + | SLH |
| CAZyme | Rep_836_c_1 | Rep_836_c_1_61 | 94655 | 96580 | + | GT2 |
| pfam | Rep_836_c_1 | Rep_836_c_1_62 | 96577 | 97809 | + | PS_pyruv_trans |
| CAZyme | Rep_836_c_1 | Rep_836_c_1_63 | 98001 | 99872 | + | GT2 |
| TC | Rep_836_c_1 | Rep_836_c_1_64 | 100034 | 100870 | + | 3.A.1.103.1 |
| TC | Rep_836_c_1 | Rep_836_c_1_65 | 100870 | 102159 | + | 3.A.1.103.1 |
| CAZyme | Rep_836_c_1 | Rep_836_c_1_66 | 102415 | 105300 | + | GH2 |
Gene ID: Rep_836_c_1_49
Type: CAZyme
Location: 71086 - 72168 (+)
Type: CAZyme
Location: 71086 - 72168 (+)
Gene ID: Rep_836_c_1_50
Type: pfam
Location: 72295 - 74373 (+)
Type: pfam
Location: 72295 - 74373 (+)
Gene ID: Rep_836_c_1_51
Type: CAZyme
Location: 74522 - 76093 (-)
Type: CAZyme
Location: 74522 - 76093 (-)
Gene ID: Rep_836_c_1_52
Type: CAZyme
Location: 76303 - 78111 (+)
Type: CAZyme
Location: 76303 - 78111 (+)
Gene ID: Rep_836_c_1_53
Type: pfam
Location: 78174 - 79613 (-)
Type: pfam
Location: 78174 - 79613 (-)
Gene ID: Rep_836_c_1_54
Type: CAZyme
Location: 79721 - 80800 (+)
Type: CAZyme
Location: 79721 - 80800 (+)
Gene ID: Rep_836_c_1_55
Type: TC
Location: 80844 - 82538 (+)
Type: TC
Location: 80844 - 82538 (+)
Gene ID: Rep_836_c_1_56
Type: pfam
Location: 82541 - 84211 (+)
Type: pfam
Location: 82541 - 84211 (+)
Gene ID: Rep_836_c_1_57
Type: pfam
Location: 84273 - 85340 (+)
Type: pfam
Location: 84273 - 85340 (+)
Gene ID: Rep_836_c_1_58
Type: TC
Location: 85434 - 88652 (-)
Type: TC
Location: 85434 - 88652 (-)
Gene ID: Rep_836_c_1_59
Type: pfam
Location: 89052 - 92531 (+)
Type: pfam
Location: 89052 - 92531 (+)
Gene ID: Rep_836_c_1_60
Type: pfam
Location: 92683 - 94479 (+)
Type: pfam
Location: 92683 - 94479 (+)
Gene ID: Rep_836_c_1_61
Type: CAZyme
Location: 94655 - 96580 (+)
Type: CAZyme
Location: 94655 - 96580 (+)
Gene ID: Rep_836_c_1_62
Type: pfam
Location: 96577 - 97809 (+)
Type: pfam
Location: 96577 - 97809 (+)
Gene ID: Rep_836_c_1_63
Type: CAZyme
Location: 98001 - 99872 (+)
Type: CAZyme
Location: 98001 - 99872 (+)
Gene ID: Rep_836_c_1_64
Type: TC
Location: 100034 - 100870 (+)
Type: TC
Location: 100034 - 100870 (+)
Gene ID: Rep_836_c_1_65
Type: TC
Location: 100870 - 102159 (+)
Type: TC
Location: 100870 - 102159 (+)
Gene ID: Rep_836_c_1_66
Type: CAZyme
Location: 102415 - 105300 (+)
Type: CAZyme
Location: 102415 - 105300 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium angulatum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_836_c_1_56 | vegan > omnivore | 5.10481 | 0.00566 |
| Rep_836_c_1_56 | vegetarian > omnivore | 6.17081 | 0.00353 |
| Rep_836_c_1_57 | vegan > omnivore | 3.99609 | 0.00566 |
| Rep_836_c_1_57 | vegetarian > omnivore | 4.63935 | 0.00353 |