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Cluster: Rep_816_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_816_c_3 Rep_816_c_3_50 54800 56347 - 4.C.1.1.7
STP Rep_816_c_3 Rep_816_c_3_51 56564 57997 - Pyr_redox_2
TF Rep_816_c_3 Rep_816_c_3_52 58317 59048 + GntR
TC Rep_816_c_3 Rep_816_c_3_53 59150 60136 - 3.A.1.1.25
TC Rep_816_c_3 Rep_816_c_3_54 60133 61005 - 3.A.1.1.25
STP Rep_816_c_3 Rep_816_c_3_55 61034 62395 - SBP_bac_1
TC Rep_816_c_3 Rep_816_c_3_56 62355 63515 - 3.A.1.1.24
pfam Rep_816_c_3 Rep_816_c_3_57 63842 65110 + CoA_transf_3
CAZyme Rep_816_c_3 Rep_816_c_3_58 65586 67223 + AA3_2
Gene ID: Rep_816_c_3_50
Type: TC
Location: 54800 - 56347 (-)
Gene ID: Rep_816_c_3_51
Type: STP
Location: 56564 - 57997 (-)
Gene ID: Rep_816_c_3_52
Type: TF
Location: 58317 - 59048 (+)
Gene ID: Rep_816_c_3_53
Type: TC
Location: 59150 - 60136 (-)
Gene ID: Rep_816_c_3_54
Type: TC
Location: 60133 - 61005 (-)
Gene ID: Rep_816_c_3_55
Type: STP
Location: 61034 - 62395 (-)
Gene ID: Rep_816_c_3_56
Type: TC
Location: 62355 - 63515 (-)
Gene ID: Rep_816_c_3_57
Type: pfam
Location: 63842 - 65110 (+)
Gene ID: Rep_816_c_3_58
Type: CAZyme
Location: 65586 - 67223 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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