Cluster: Rep_814_CGC41
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_814
- CGC Family ID: CGCFAM_05664
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_814_c_78 | Rep_814_c_78_135 | 153401 | 154471 | - | 1.B.1.6.2 |
| pfam | Rep_814_c_78 | Rep_814_c_78_136 | 154624 | 155148 | - | OHCU_decarbox |
| CAZyme | Rep_814_c_78 | Rep_814_c_78_137 | 155145 | 156107 | - | CE4 |
| peptidase | Rep_814_c_78 | Rep_814_c_78_138 | 156219 | 157637 | - | M38.UNW |
| TC | Rep_814_c_78 | Rep_814_c_78_139 | 157642 | 159051 | - | 2.A.40.3.3 |
| TF | Rep_814_c_78 | Rep_814_c_78_140 | 159267 | 160025 | - | GntR |
| TC | Rep_814_c_78 | Rep_814_c_78_141 | 160403 | 160756 | + | 9.B.35.2.1 |
| TC | Rep_814_c_78 | Rep_814_c_78_142 | 160774 | 162051 | + | 9.B.43.1.1 |
| NULL(UNKNOWN) | Rep_814_c_78 | Rep_814_c_78_143 | 162603 | 162845 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_814_c_78 | Rep_814_c_78_144 | 162986 | 165574 | + | 3.A.23.2.1 |
| pfam | Rep_814_c_78 | Rep_814_c_78_145 | 165605 | 167926 | + | Tle3 |
| NULL(UNKNOWN) | Rep_814_c_78 | Rep_814_c_78_146 | 167937 | 169523 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_814_c_78 | Rep_814_c_78_147 | 169567 | 170139 | - | 2.A.106.1.4 |
Gene ID: Rep_814_c_78_135
Type: TC
Location: 153401 - 154471 (-)
Type: TC
Location: 153401 - 154471 (-)
Gene ID: Rep_814_c_78_136
Type: pfam
Location: 154624 - 155148 (-)
Type: pfam
Location: 154624 - 155148 (-)
Gene ID: Rep_814_c_78_137
Type: CAZyme
Location: 155145 - 156107 (-)
Type: CAZyme
Location: 155145 - 156107 (-)
Gene ID: Rep_814_c_78_138
Type: peptidase
Location: 156219 - 157637 (-)
Type: peptidase
Location: 156219 - 157637 (-)
Gene ID: Rep_814_c_78_139
Type: TC
Location: 157642 - 159051 (-)
Type: TC
Location: 157642 - 159051 (-)
Gene ID: Rep_814_c_78_140
Type: TF
Location: 159267 - 160025 (-)
Type: TF
Location: 159267 - 160025 (-)
Gene ID: Rep_814_c_78_141
Type: TC
Location: 160403 - 160756 (+)
Type: TC
Location: 160403 - 160756 (+)
Gene ID: Rep_814_c_78_142
Type: TC
Location: 160774 - 162051 (+)
Type: TC
Location: 160774 - 162051 (+)
Gene ID: Rep_814_c_78_143
Type:
Location: 162603 - 162845 (+)
Type:
Location: 162603 - 162845 (+)
Gene ID: Rep_814_c_78_144
Type: TC
Location: 162986 - 165574 (+)
Type: TC
Location: 162986 - 165574 (+)
Gene ID: Rep_814_c_78_145
Type: pfam
Location: 165605 - 167926 (+)
Type: pfam
Location: 165605 - 167926 (+)
Gene ID: Rep_814_c_78_146
Type:
Location: 167937 - 169523 (+)
Type:
Location: 167937 - 169523 (+)
Gene ID: Rep_814_c_78_147
Type: TC
Location: 169567 - 170139 (-)
Type: TC
Location: 169567 - 170139 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ralstonia
Species
Ralstonia pickettii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.