Cluster: Rep_814_CGC40
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_814
- CGC Family ID: CGCFAM_03104
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_814_c_78 | Rep_814_c_78_74 | 91065 | 92132 | + | GT4 |
| pfam | Rep_814_c_78 | Rep_814_c_78_75 | 92129 | 93409 | + | Wzy_C |
| CAZyme | Rep_814_c_78 | Rep_814_c_78_76 | 93422 | 94195 | + | GT2 |
| CAZyme | Rep_814_c_78 | Rep_814_c_78_77 | 94182 | 95024 | + | GT2 |
| CAZyme | Rep_814_c_78 | Rep_814_c_78_78 | 95040 | 95822 | - | GT25 |
| TC | Rep_814_c_78 | Rep_814_c_78_79 | 96055 | 97779 | + | 3.A.1.106.1 |
Gene ID: Rep_814_c_78_74
Type: CAZyme
Location: 91065 - 92132 (+)
Type: CAZyme
Location: 91065 - 92132 (+)
Gene ID: Rep_814_c_78_75
Type: pfam
Location: 92129 - 93409 (+)
Type: pfam
Location: 92129 - 93409 (+)
Gene ID: Rep_814_c_78_76
Type: CAZyme
Location: 93422 - 94195 (+)
Type: CAZyme
Location: 93422 - 94195 (+)
Gene ID: Rep_814_c_78_77
Type: CAZyme
Location: 94182 - 95024 (+)
Type: CAZyme
Location: 94182 - 95024 (+)
Gene ID: Rep_814_c_78_78
Type: CAZyme
Location: 95040 - 95822 (-)
Type: CAZyme
Location: 95040 - 95822 (-)
Gene ID: Rep_814_c_78_79
Type: TC
Location: 96055 - 97779 (+)
Type: TC
Location: 96055 - 97779 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ralstonia
Species
Ralstonia pickettii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.