Cluster: Rep_814_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_814
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_814_c_51 | Rep_814_c_51_56 | 57563 | 58855 | + | 2.A.1.14.2 |
| CAZyme | Rep_814_c_51 | Rep_814_c_51_57 | 58866 | 61277 | + | GH31_2 |
| TC | Rep_814_c_51 | Rep_814_c_51_58 | 61452 | 62579 | + | 1.B.1.4.3 |
| pfam | Rep_814_c_51 | Rep_814_c_51_59 | 62579 | 63514 | + | Aldose_epim |
| TF | Rep_814_c_51 | Rep_814_c_51_60 | 63961 | 64887 | - | HTH_1 |
| TC | Rep_814_c_51 | Rep_814_c_51_61 | 64980 | 66083 | + | 2.A.98.1.3 |
Gene ID: Rep_814_c_51_56
Type: TC
Location: 57563 - 58855 (+)
Type: TC
Location: 57563 - 58855 (+)
Gene ID: Rep_814_c_51_57
Type: CAZyme
Location: 58866 - 61277 (+)
Type: CAZyme
Location: 58866 - 61277 (+)
Gene ID: Rep_814_c_51_58
Type: TC
Location: 61452 - 62579 (+)
Type: TC
Location: 61452 - 62579 (+)
Gene ID: Rep_814_c_51_59
Type: pfam
Location: 62579 - 63514 (+)
Type: pfam
Location: 62579 - 63514 (+)
Gene ID: Rep_814_c_51_60
Type: TF
Location: 63961 - 64887 (-)
Type: TF
Location: 63961 - 64887 (-)
Gene ID: Rep_814_c_51_61
Type: TC
Location: 64980 - 66083 (+)
Type: TC
Location: 64980 - 66083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ralstonia
Species
Ralstonia pickettii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.