Cluster: Rep_814_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_814
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_814_c_30 | Rep_814_c_30_182 | 183161 | 184516 | - | 2.A.66.1.36 |
| TC | Rep_814_c_30 | Rep_814_c_30_183 | 184920 | 186524 | + | 2.A.3.11.1 |
| TF | Rep_814_c_30 | Rep_814_c_30_184 | 186642 | 187544 | - | HTH_1 |
| TC | Rep_814_c_30 | Rep_814_c_30_185 | 187654 | 188538 | + | 8.A.5.1.5 |
| STP | Rep_814_c_30 | Rep_814_c_30_186 | 188963 | 190747 | + | EAL | GGDEF |
| TF | Rep_814_c_30 | Rep_814_c_30_187 | 190764 | 191516 | - | GerE |
| CAZyme | Rep_814_c_30 | Rep_814_c_30_188 | 192448 | 193866 | + | CBM32 |
Gene ID: Rep_814_c_30_182
Type: TC
Location: 183161 - 184516 (-)
Type: TC
Location: 183161 - 184516 (-)
Gene ID: Rep_814_c_30_183
Type: TC
Location: 184920 - 186524 (+)
Type: TC
Location: 184920 - 186524 (+)
Gene ID: Rep_814_c_30_184
Type: TF
Location: 186642 - 187544 (-)
Type: TF
Location: 186642 - 187544 (-)
Gene ID: Rep_814_c_30_185
Type: TC
Location: 187654 - 188538 (+)
Type: TC
Location: 187654 - 188538 (+)
Gene ID: Rep_814_c_30_186
Type: STP
Location: 188963 - 190747 (+)
Type: STP
Location: 188963 - 190747 (+)
Gene ID: Rep_814_c_30_187
Type: TF
Location: 190764 - 191516 (-)
Type: TF
Location: 190764 - 191516 (-)
Gene ID: Rep_814_c_30_188
Type: CAZyme
Location: 192448 - 193866 (+)
Type: CAZyme
Location: 192448 - 193866 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ralstonia
Species
Ralstonia pickettii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.