Cluster: Rep_814_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_814
- CGC Family ID: CGCFAM_10917
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_814_c_15 | Rep_814_c_15_21 | 25114 | 25974 | - | GT90 |
| pfam | Rep_814_c_15 | Rep_814_c_15_22 | 26496 | 26816 | - | CusF_Ec |
| pfam | Rep_814_c_15 | Rep_814_c_15_23 | 26854 | 27342 | - | Copper-bind |
| CAZyme | Rep_814_c_15 | Rep_814_c_15_24 | 27385 | 28683 | - | AA1 |
| TC | Rep_814_c_15 | Rep_814_c_15_25 | 28686 | 30095 | - | 1.B.17.2.4 |
Gene ID: Rep_814_c_15_21
Type: CAZyme
Location: 25114 - 25974 (-)
Type: CAZyme
Location: 25114 - 25974 (-)
Gene ID: Rep_814_c_15_22
Type: pfam
Location: 26496 - 26816 (-)
Type: pfam
Location: 26496 - 26816 (-)
Gene ID: Rep_814_c_15_23
Type: pfam
Location: 26854 - 27342 (-)
Type: pfam
Location: 26854 - 27342 (-)
Gene ID: Rep_814_c_15_24
Type: CAZyme
Location: 27385 - 28683 (-)
Type: CAZyme
Location: 27385 - 28683 (-)
Gene ID: Rep_814_c_15_25
Type: TC
Location: 28686 - 30095 (-)
Type: TC
Location: 28686 - 30095 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Ralstonia
Species
Ralstonia pickettii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.