Cluster: Rep_807_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_807
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_807_c_12 | Rep_807_c_12_9 | 13320 | 14447 | - | GH179 |
| TC | Rep_807_c_12 | Rep_807_c_12_10 | 14460 | 15608 | - | 2.A.1.10.4 |
| pfam | Rep_807_c_12 | Rep_807_c_12_11 | 15705 | 16757 | - | AP_endonuc_2 |
| TF | Rep_807_c_12 | Rep_807_c_12_12 | 16853 | 17860 | + | LacI |
| TC | Rep_807_c_12 | Rep_807_c_12_13 | 18008 | 19060 | + | 9.B.34.1.3 |
| pfam | Rep_807_c_12 | Rep_807_c_12_14 | 19331 | 20356 | + | AI-2E_transport |
| TC | Rep_807_c_12 | Rep_807_c_12_15 | 20518 | 22260 | + | 9.B.34.1.1 |
Gene ID: Rep_807_c_12_9
Type: CAZyme
Location: 13320 - 14447 (-)
Type: CAZyme
Location: 13320 - 14447 (-)
Gene ID: Rep_807_c_12_10
Type: TC
Location: 14460 - 15608 (-)
Type: TC
Location: 14460 - 15608 (-)
Gene ID: Rep_807_c_12_11
Type: pfam
Location: 15705 - 16757 (-)
Type: pfam
Location: 15705 - 16757 (-)
Gene ID: Rep_807_c_12_12
Type: TF
Location: 16853 - 17860 (+)
Type: TF
Location: 16853 - 17860 (+)
Gene ID: Rep_807_c_12_13
Type: TC
Location: 18008 - 19060 (+)
Type: TC
Location: 18008 - 19060 (+)
Gene ID: Rep_807_c_12_14
Type: pfam
Location: 19331 - 20356 (+)
Type: pfam
Location: 19331 - 20356 (+)
Gene ID: Rep_807_c_12_15
Type: TC
Location: 20518 - 22260 (+)
Type: TC
Location: 20518 - 22260 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.