Cluster: Rep_807_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_807
- CGC Family ID: CGCFAM_01442
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_807_c_7 | Rep_807_c_7_34 | 37700 | 40861 | - | 2.A.6.2.17 |
| TC | Rep_807_c_7 | Rep_807_c_7_35 | 40866 | 41996 | - | 2.A.6.2.27 |
| STP | Rep_807_c_7 | Rep_807_c_7_36 | 42114 | 42794 | + | TetR_N |
| pfam | Rep_807_c_7 | Rep_807_c_7_37 | 42931 | 43578 | + | RrnaAD | PCMT | CMAS | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 |
| TC | Rep_807_c_7 | Rep_807_c_7_38 | 43595 | 44953 | + | 2.A.6.2.27 |
| NULL(UNKNOWN) | Rep_807_c_7 | Rep_807_c_7_39 | 45026 | 46270 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_807_c_7 | Rep_807_c_7_40 | 46494 | 47792 | - | GT30 |
Gene ID: Rep_807_c_7_34
Type: TC
Location: 37700 - 40861 (-)
Type: TC
Location: 37700 - 40861 (-)
Gene ID: Rep_807_c_7_35
Type: TC
Location: 40866 - 41996 (-)
Type: TC
Location: 40866 - 41996 (-)
Gene ID: Rep_807_c_7_36
Type: STP
Location: 42114 - 42794 (+)
Type: STP
Location: 42114 - 42794 (+)
Gene ID: Rep_807_c_7_37
Type: pfam
Location: 42931 - 43578 (+)
Type: pfam
Location: 42931 - 43578 (+)
Gene ID: Rep_807_c_7_38
Type: TC
Location: 43595 - 44953 (+)
Type: TC
Location: 43595 - 44953 (+)
Gene ID: Rep_807_c_7_39
Type:
Location: 45026 - 46270 (-)
Type:
Location: 45026 - 46270 (-)
Gene ID: Rep_807_c_7_40
Type: CAZyme
Location: 46494 - 47792 (-)
Type: CAZyme
Location: 46494 - 47792 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.