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Cluster: Rep_807_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_807_c_42 Rep_807_c_42_3 1503 3950 - 3.A.7.2.1
pfam Rep_807_c_42 Rep_807_c_42_4 4032 4298 - VirB3
TC Rep_807_c_42 Rep_807_c_42_5 4333 4740 - 3.A.7.3.1
CAZyme Rep_807_c_42 Rep_807_c_42_6 4813 5796 - GH23
TC Rep_807_c_42 Rep_807_c_42_7 5800 6843 - 3.A.7.3.1
TC Rep_807_c_42 Rep_807_c_42_8 6858 8129 - 3.A.7.5.1
TC Rep_807_c_42 Rep_807_c_42_9 8126 8905 - 3.A.7.2.1
pfam Rep_807_c_42 Rep_807_c_42_10 8902 9948 - VirB8
NULL(UNKNOWN) Rep_807_c_42 Rep_807_c_42_11 10038 10712 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_807_c_42 Rep_807_c_42_12 10916 12595 - 3.A.7.1.1
NULL(UNKNOWN) Rep_807_c_42 Rep_807_c_42_13 12631 12888 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_807_c_42 Rep_807_c_42_14 13161 14372 + 2.A.1.2.65
Gene ID: Rep_807_c_42_3
Type: TC
Location: 1503 - 3950 (-)
Gene ID: Rep_807_c_42_4
Type: pfam
Location: 4032 - 4298 (-)
Gene ID: Rep_807_c_42_5
Type: TC
Location: 4333 - 4740 (-)
Gene ID: Rep_807_c_42_6
Type: CAZyme
Location: 4813 - 5796 (-)
Gene ID: Rep_807_c_42_7
Type: TC
Location: 5800 - 6843 (-)
Gene ID: Rep_807_c_42_8
Type: TC
Location: 6858 - 8129 (-)
Gene ID: Rep_807_c_42_9
Type: TC
Location: 8126 - 8905 (-)
Gene ID: Rep_807_c_42_10
Type: pfam
Location: 8902 - 9948 (-)
Gene ID: Rep_807_c_42_11
Type:
Location: 10038 - 10712 (-)
Gene ID: Rep_807_c_42_12
Type: TC
Location: 10916 - 12595 (-)
Gene ID: Rep_807_c_42_13
Type:
Location: 12631 - 12888 (-)
Gene ID: Rep_807_c_42_14
Type: TC
Location: 13161 - 14372 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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