Cluster: Rep_806_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_806
- CGC Family ID: CGCFAM_00009
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_806_c_5 | Rep_806_c_5_76 | 96408 | 98159 | - | GT4 |
| CAZyme | Rep_806_c_5 | Rep_806_c_5_77 | 98180 | 99241 | - | GT4 |
| pfam | Rep_806_c_5 | Rep_806_c_5_78 | 99294 | 101576 | - | Methyltransf_11 | Methyltransf_12 | Methyltransf_25 | Methyltransf_31 |
| TC | Rep_806_c_5 | Rep_806_c_5_79 | 101614 | 102900 | - | 3.A.1.103.6 |
| TC | Rep_806_c_5 | Rep_806_c_5_80 | 102897 | 103688 | - | 3.A.1.103.6 |
| CAZyme | Rep_806_c_5 | Rep_806_c_5_81 | 103802 | 105196 | - | GT4 |
Gene ID: Rep_806_c_5_76
Type: CAZyme
Location: 96408 - 98159 (-)
Type: CAZyme
Location: 96408 - 98159 (-)
Gene ID: Rep_806_c_5_77
Type: CAZyme
Location: 98180 - 99241 (-)
Type: CAZyme
Location: 98180 - 99241 (-)
Gene ID: Rep_806_c_5_78
Type: pfam
Location: 99294 - 101576 (-)
Type: pfam
Location: 99294 - 101576 (-)
Gene ID: Rep_806_c_5_79
Type: TC
Location: 101614 - 102900 (-)
Type: TC
Location: 101614 - 102900 (-)
Gene ID: Rep_806_c_5_80
Type: TC
Location: 102897 - 103688 (-)
Type: TC
Location: 102897 - 103688 (-)
Gene ID: Rep_806_c_5_81
Type: CAZyme
Location: 103802 - 105196 (-)
Type: CAZyme
Location: 103802 - 105196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.