Cluster: Rep_806_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: beta-glucan
- Genome ID: Rep_806
- CGC Family ID: CGCFAM_00177
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_5 | Rep_806_c_5_8 | 6605 | 8269 | + | 3.A.1.120.6 |
| TC | Rep_806_c_5 | Rep_806_c_5_9 | 8395 | 9711 | + | 2.A.40.7.6 |
| CAZyme | Rep_806_c_5 | Rep_806_c_5_10 | 9749 | 10897 | - | GH8 |
| TC | Rep_806_c_5 | Rep_806_c_5_11 | 10997 | 15478 | - | 1.B.55.3.1 |
| CAZyme | Rep_806_c_5 | Rep_806_c_5_12 | 15460 | 16623 | - | GH8 |
| TC | Rep_806_c_5 | Rep_806_c_5_13 | 16626 | 18971 | - | 4.D.3.1.6 |
| CAZyme | Rep_806_c_5 | Rep_806_c_5_14 | 18968 | 21118 | - | GT2 |
Gene ID: Rep_806_c_5_8
Type: TC
Location: 6605 - 8269 (+)
Type: TC
Location: 6605 - 8269 (+)
Gene ID: Rep_806_c_5_9
Type: TC
Location: 8395 - 9711 (+)
Type: TC
Location: 8395 - 9711 (+)
Gene ID: Rep_806_c_5_10
Type: CAZyme
Location: 9749 - 10897 (-)
Type: CAZyme
Location: 9749 - 10897 (-)
Gene ID: Rep_806_c_5_11
Type: TC
Location: 10997 - 15478 (-)
Type: TC
Location: 10997 - 15478 (-)
Gene ID: Rep_806_c_5_12
Type: CAZyme
Location: 15460 - 16623 (-)
Type: CAZyme
Location: 15460 - 16623 (-)
Gene ID: Rep_806_c_5_13
Type: TC
Location: 16626 - 18971 (-)
Type: TC
Location: 16626 - 18971 (-)
Gene ID: Rep_806_c_5_14
Type: CAZyme
Location: 18968 - 21118 (-)
Type: CAZyme
Location: 18968 - 21118 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.