Cluster: Rep_806_CGC44
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_806
- CGC Family ID: CGCFAM_08741
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_65 | Rep_806_c_65_1 | 27 | 2477 | + | 1.B.14.6.11 |
| pfam | Rep_806_c_65 | Rep_806_c_65_2 | 2638 | 3408 | + | Trehalose_PPase |
| CAZyme | Rep_806_c_65 | Rep_806_c_65_3 | 3495 | 5276 | + | GH15 |
| CAZyme | Rep_806_c_65 | Rep_806_c_65_4 | 5273 | 6637 | + | GT20 |
| pfam | Rep_806_c_65 | Rep_806_c_65_5 | 6709 | 7476 | - | Cu-oxidase_4 |
| pfam | Rep_806_c_65 | Rep_806_c_65_6 | 7488 | 8483 | - | PseudoU_synth_2 | S4 |
| TC | Rep_806_c_65 | Rep_806_c_65_7 | 8600 | 9484 | + | 1.B.33.1.3 |
Gene ID: Rep_806_c_65_1
Type: TC
Location: 27 - 2477 (+)
Type: TC
Location: 27 - 2477 (+)
Gene ID: Rep_806_c_65_2
Type: pfam
Location: 2638 - 3408 (+)
Type: pfam
Location: 2638 - 3408 (+)
Gene ID: Rep_806_c_65_3
Type: CAZyme
Location: 3495 - 5276 (+)
Type: CAZyme
Location: 3495 - 5276 (+)
Gene ID: Rep_806_c_65_4
Type: CAZyme
Location: 5273 - 6637 (+)
Type: CAZyme
Location: 5273 - 6637 (+)
Gene ID: Rep_806_c_65_5
Type: pfam
Location: 6709 - 7476 (-)
Type: pfam
Location: 6709 - 7476 (-)
Gene ID: Rep_806_c_65_6
Type: pfam
Location: 7488 - 8483 (-)
Type: pfam
Location: 7488 - 8483 (-)
Gene ID: Rep_806_c_65_7
Type: TC
Location: 8600 - 9484 (+)
Type: TC
Location: 8600 - 9484 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.