Cluster: Rep_806_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_806
- CGC Family ID: CGCFAM_02817
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_4 | Rep_806_c_4_28 | 27371 | 28417 | - | 8.A.59.2.1 |
| peptidase | Rep_806_c_4 | Rep_806_c_4_29 | 28422 | 29084 | - | S09.UPW |
| CAZyme | Rep_806_c_4 | Rep_806_c_4_30 | 29163 | 31070 | - | GT2 |
| NULL(UNKNOWN) | Rep_806_c_4 | Rep_806_c_4_31 | 31566 | 31745 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_806_c_4 | Rep_806_c_4_32 | 31940 | 32329 | + | 1.E.55.2.1 |
Gene ID: Rep_806_c_4_28
Type: TC
Location: 27371 - 28417 (-)
Type: TC
Location: 27371 - 28417 (-)
Gene ID: Rep_806_c_4_29
Type: peptidase
Location: 28422 - 29084 (-)
Type: peptidase
Location: 28422 - 29084 (-)
Gene ID: Rep_806_c_4_30
Type: CAZyme
Location: 29163 - 31070 (-)
Type: CAZyme
Location: 29163 - 31070 (-)
Gene ID: Rep_806_c_4_31
Type:
Location: 31566 - 31745 (-)
Type:
Location: 31566 - 31745 (-)
Gene ID: Rep_806_c_4_32
Type: TC
Location: 31940 - 32329 (+)
Type: TC
Location: 31940 - 32329 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.