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Cluster: Rep_806_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_806_c_42 Rep_806_c_42_27 25569 26342 - GH23
TC Rep_806_c_42 Rep_806_c_42_28 26447 27826 - 2.A.3.1.7
STP Rep_806_c_42 Rep_806_c_42_29 28063 29667 + EAL
pfam Rep_806_c_42 Rep_806_c_42_30 29677 30651 - Polysacc_deac_1
TC Rep_806_c_42 Rep_806_c_42_31 30731 31933 - 2.A.1.2.87
TF Rep_806_c_42 Rep_806_c_42_32 32243 33145 + HTH_1
TC Rep_806_c_42 Rep_806_c_42_33 33332 34942 + 3.A.1.120.1
TC Rep_806_c_42 Rep_806_c_42_34 34953 36281 - 9.B.10.1.1
Gene ID: Rep_806_c_42_27
Type: CAZyme
Location: 25569 - 26342 (-)
Gene ID: Rep_806_c_42_28
Type: TC
Location: 26447 - 27826 (-)
Gene ID: Rep_806_c_42_29
Type: STP
Location: 28063 - 29667 (+)
Gene ID: Rep_806_c_42_30
Type: pfam
Location: 29677 - 30651 (-)
Gene ID: Rep_806_c_42_31
Type: TC
Location: 30731 - 31933 (-)
Gene ID: Rep_806_c_42_32
Type: TF
Location: 32243 - 33145 (+)
Gene ID: Rep_806_c_42_33
Type: TC
Location: 33332 - 34942 (+)
Gene ID: Rep_806_c_42_34
Type: TC
Location: 34953 - 36281 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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