Cluster: Rep_806_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_35 | Rep_806_c_35_18 | 16912 | 18306 | + | 2.A.3.1.12 |
| pfam | Rep_806_c_35 | Rep_806_c_35_19 | 18580 | 21450 | - | Aminotran_5 | GDC-P | GDC-P | GcvP2_C |
| TC | Rep_806_c_35 | Rep_806_c_35_20 | 21943 | 23166 | + | 2.A.1.2.27 |
| pfam | Rep_806_c_35 | Rep_806_c_35_21 | 23324 | 24217 | + | SIP | FAD_binding_9 |
| NULL(UNKNOWN) | Rep_806_c_35 | Rep_806_c_35_22 | 24298 | 24684 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_806_c_35 | Rep_806_c_35_23 | 24725 | 26254 | - | GH19 |
Gene ID: Rep_806_c_35_18
Type: TC
Location: 16912 - 18306 (+)
Type: TC
Location: 16912 - 18306 (+)
Gene ID: Rep_806_c_35_19
Type: pfam
Location: 18580 - 21450 (-)
Type: pfam
Location: 18580 - 21450 (-)
Gene ID: Rep_806_c_35_20
Type: TC
Location: 21943 - 23166 (+)
Type: TC
Location: 21943 - 23166 (+)
Gene ID: Rep_806_c_35_21
Type: pfam
Location: 23324 - 24217 (+)
Type: pfam
Location: 23324 - 24217 (+)
Gene ID: Rep_806_c_35_22
Type:
Location: 24298 - 24684 (+)
Type:
Location: 24298 - 24684 (+)
Gene ID: Rep_806_c_35_23
Type: CAZyme
Location: 24725 - 26254 (-)
Type: CAZyme
Location: 24725 - 26254 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.