Cluster: Rep_806_CGC28
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_26 | Rep_806_c_26_3 | 3030 | 3662 | + | 1.C.113.1.1 |
| TC | Rep_806_c_26 | Rep_806_c_26_4 | 4109 | 6082 | + | 9.B.121.1.1 |
| STP | Rep_806_c_26 | Rep_806_c_26_5 | 6146 | 6577 | - | CBS | CBS |
| CAZyme | Rep_806_c_26 | Rep_806_c_26_6 | 6537 | 7556 | - | GT2 |
| CAZyme | Rep_806_c_26 | Rep_806_c_26_7 | 7596 | 8345 | - | GT51 |
| pfam | Rep_806_c_26 | Rep_806_c_26_8 | 8425 | 9321 | + | HSP33 |
| NULL(UNKNOWN) | Rep_806_c_26 | Rep_806_c_26_9 | 9441 | 10298 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_806_c_26 | Rep_806_c_26_10 | 10650 | 13475 | + | 1.B.14.6.11 |
Gene ID: Rep_806_c_26_3
Type: TC
Location: 3030 - 3662 (+)
Type: TC
Location: 3030 - 3662 (+)
Gene ID: Rep_806_c_26_4
Type: TC
Location: 4109 - 6082 (+)
Type: TC
Location: 4109 - 6082 (+)
Gene ID: Rep_806_c_26_5
Type: STP
Location: 6146 - 6577 (-)
Type: STP
Location: 6146 - 6577 (-)
Gene ID: Rep_806_c_26_6
Type: CAZyme
Location: 6537 - 7556 (-)
Type: CAZyme
Location: 6537 - 7556 (-)
Gene ID: Rep_806_c_26_7
Type: CAZyme
Location: 7596 - 8345 (-)
Type: CAZyme
Location: 7596 - 8345 (-)
Gene ID: Rep_806_c_26_8
Type: pfam
Location: 8425 - 9321 (+)
Type: pfam
Location: 8425 - 9321 (+)
Gene ID: Rep_806_c_26_9
Type:
Location: 9441 - 10298 (+)
Type:
Location: 9441 - 10298 (+)
Gene ID: Rep_806_c_26_10
Type: TC
Location: 10650 - 13475 (+)
Type: TC
Location: 10650 - 13475 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.