Cluster: Rep_806_CGC16
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_806
- CGC Family ID: CGCFAM_03856
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_806_c_13 | Rep_806_c_13_63 | 64396 | 66732 | - | GH20 |
| TC | Rep_806_c_13 | Rep_806_c_13_64 | 66826 | 69531 | - | 1.B.14.12.2 |
| STP | Rep_806_c_13 | Rep_806_c_13_65 | 69687 | 70706 | - | Glucokinase |
| TC | Rep_806_c_13 | Rep_806_c_13_66 | 71073 | 72365 | + | 2.A.1.7.9 |
| TF | Rep_806_c_13 | Rep_806_c_13_67 | 72408 | 73475 | + | LacI |
| STP | Rep_806_c_13 | Rep_806_c_13_68 | 73482 | 74510 | + | SIS | SIS |
| CAZyme | Rep_806_c_13 | Rep_806_c_13_69 | 74510 | 75658 | + | CE9 |
| pfam | Rep_806_c_13 | Rep_806_c_13_70 | 75655 | 76722 | + | HGSNAT_cat |
| TC | Rep_806_c_13 | Rep_806_c_13_71 | 76841 | 79834 | + | 1.B.12.5.7 |
| peptidase | Rep_806_c_13 | Rep_806_c_13_72 | 79994 | 81037 | + | S41.UNA |
| STP | Rep_806_c_13 | Rep_806_c_13_73 | 81092 | 82312 | - | HD |
| CAZyme | Rep_806_c_13 | Rep_806_c_13_74 | 82372 | 84360 | - | GH23 |
| TC | Rep_806_c_13 | Rep_806_c_13_75 | 84893 | 87766 | + | 1.B.14.3.1 |
| TC | Rep_806_c_13 | Rep_806_c_13_76 | 87981 | 88607 | + | 2.A.76.1.1 |
| TC | Rep_806_c_13 | Rep_806_c_13_77 | 88743 | 90812 | - | 1.B.14.1.1 |
Gene ID: Rep_806_c_13_63
Type: CAZyme
Location: 64396 - 66732 (-)
Type: CAZyme
Location: 64396 - 66732 (-)
Gene ID: Rep_806_c_13_64
Type: TC
Location: 66826 - 69531 (-)
Type: TC
Location: 66826 - 69531 (-)
Gene ID: Rep_806_c_13_65
Type: STP
Location: 69687 - 70706 (-)
Type: STP
Location: 69687 - 70706 (-)
Gene ID: Rep_806_c_13_66
Type: TC
Location: 71073 - 72365 (+)
Type: TC
Location: 71073 - 72365 (+)
Gene ID: Rep_806_c_13_67
Type: TF
Location: 72408 - 73475 (+)
Type: TF
Location: 72408 - 73475 (+)
Gene ID: Rep_806_c_13_68
Type: STP
Location: 73482 - 74510 (+)
Type: STP
Location: 73482 - 74510 (+)
Gene ID: Rep_806_c_13_69
Type: CAZyme
Location: 74510 - 75658 (+)
Type: CAZyme
Location: 74510 - 75658 (+)
Gene ID: Rep_806_c_13_70
Type: pfam
Location: 75655 - 76722 (+)
Type: pfam
Location: 75655 - 76722 (+)
Gene ID: Rep_806_c_13_71
Type: TC
Location: 76841 - 79834 (+)
Type: TC
Location: 76841 - 79834 (+)
Gene ID: Rep_806_c_13_72
Type: peptidase
Location: 79994 - 81037 (+)
Type: peptidase
Location: 79994 - 81037 (+)
Gene ID: Rep_806_c_13_73
Type: STP
Location: 81092 - 82312 (-)
Type: STP
Location: 81092 - 82312 (-)
Gene ID: Rep_806_c_13_74
Type: CAZyme
Location: 82372 - 84360 (-)
Type: CAZyme
Location: 82372 - 84360 (-)
Gene ID: Rep_806_c_13_75
Type: TC
Location: 84893 - 87766 (+)
Type: TC
Location: 84893 - 87766 (+)
Gene ID: Rep_806_c_13_76
Type: TC
Location: 87981 - 88607 (+)
Type: TC
Location: 87981 - 88607 (+)
Gene ID: Rep_806_c_13_77
Type: TC
Location: 88743 - 90812 (-)
Type: TC
Location: 88743 - 90812 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.