Cluster: Rep_806_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_13 | Rep_806_c_13_35 | 34485 | 35531 | + | 9.B.157.1.3 |
| TC | Rep_806_c_13 | Rep_806_c_13_36 | 35685 | 36803 | + | 9.B.157.1.3 |
| pfam | Rep_806_c_13 | Rep_806_c_13_37 | 36800 | 37285 | + | MreD |
| peptidase | Rep_806_c_13 | Rep_806_c_13_38 | 37287 | 39347 | + | X52.001 |
| TC | Rep_806_c_13 | Rep_806_c_13_39 | 39344 | 40456 | + | 2.A.103.1.2 |
| TC | Rep_806_c_13 | Rep_806_c_13_40 | 40623 | 41723 | + | 2.A.103.1.2 |
| CAZyme | Rep_806_c_13 | Rep_806_c_13_41 | 42321 | 43466 | + | GH103 |
Gene ID: Rep_806_c_13_35
Type: TC
Location: 34485 - 35531 (+)
Type: TC
Location: 34485 - 35531 (+)
Gene ID: Rep_806_c_13_36
Type: TC
Location: 35685 - 36803 (+)
Type: TC
Location: 35685 - 36803 (+)
Gene ID: Rep_806_c_13_37
Type: pfam
Location: 36800 - 37285 (+)
Type: pfam
Location: 36800 - 37285 (+)
Gene ID: Rep_806_c_13_38
Type: peptidase
Location: 37287 - 39347 (+)
Type: peptidase
Location: 37287 - 39347 (+)
Gene ID: Rep_806_c_13_39
Type: TC
Location: 39344 - 40456 (+)
Type: TC
Location: 39344 - 40456 (+)
Gene ID: Rep_806_c_13_40
Type: TC
Location: 40623 - 41723 (+)
Type: TC
Location: 40623 - 41723 (+)
Gene ID: Rep_806_c_13_41
Type: CAZyme
Location: 42321 - 43466 (+)
Type: CAZyme
Location: 42321 - 43466 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.