Cluster: Rep_806_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_806
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_806_c_11 | Rep_806_c_11_56 | 59496 | 68351 | - | 1.C.75.1.2 |
| TC | Rep_806_c_11 | Rep_806_c_11_57 | 68407 | 70155 | - | 1.B.20.1.5 |
| TC | Rep_806_c_11 | Rep_806_c_11_58 | 70630 | 71841 | + | 2.A.1.17.3 |
| pfam | Rep_806_c_11 | Rep_806_c_11_59 | 72187 | 74220 | + | TPR_19 | PgaA_barrel |
| CAZyme | Rep_806_c_11 | Rep_806_c_11_60 | 74222 | 76126 | + | CE4 | GH153 |
| CAZyme | Rep_806_c_11 | Rep_806_c_11_61 | 76134 | 77381 | + | GT2 |
Gene ID: Rep_806_c_11_56
Type: TC
Location: 59496 - 68351 (-)
Type: TC
Location: 59496 - 68351 (-)
Gene ID: Rep_806_c_11_57
Type: TC
Location: 68407 - 70155 (-)
Type: TC
Location: 68407 - 70155 (-)
Gene ID: Rep_806_c_11_58
Type: TC
Location: 70630 - 71841 (+)
Type: TC
Location: 70630 - 71841 (+)
Gene ID: Rep_806_c_11_59
Type: pfam
Location: 72187 - 74220 (+)
Type: pfam
Location: 72187 - 74220 (+)
Gene ID: Rep_806_c_11_60
Type: CAZyme
Location: 74222 - 76126 (+)
Type: CAZyme
Location: 74222 - 76126 (+)
Gene ID: Rep_806_c_11_61
Type: CAZyme
Location: 76134 - 77381 (+)
Type: CAZyme
Location: 76134 - 77381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas bentonitica_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.