Cluster: Rep_800_CGC42
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_800
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_800_c_48 | Rep_800_c_48_55 | 56991 | 59240 | + | GH50 |
| peptidase | Rep_800_c_48 | Rep_800_c_48_56 | 59350 | 60495 | + | S12.A11 |
| TC | Rep_800_c_48 | Rep_800_c_48_57 | 60701 | 61582 | + | 9.B.186.1.3 |
| pfam | Rep_800_c_48 | Rep_800_c_48_58 | 61681 | 62328 | + | PNPOx_N | PNP_phzG_C | Pyridox_oxase_2 |
| TF | Rep_800_c_48 | Rep_800_c_48_59 | 62336 | 63448 | + | HTH_8 |
| TC | Rep_800_c_48 | Rep_800_c_48_60 | 63607 | 64965 | + | 2.A.8.1.6 |
Gene ID: Rep_800_c_48_55
Type: CAZyme
Location: 56991 - 59240 (+)
Type: CAZyme
Location: 56991 - 59240 (+)
Gene ID: Rep_800_c_48_56
Type: peptidase
Location: 59350 - 60495 (+)
Type: peptidase
Location: 59350 - 60495 (+)
Gene ID: Rep_800_c_48_57
Type: TC
Location: 60701 - 61582 (+)
Type: TC
Location: 60701 - 61582 (+)
Gene ID: Rep_800_c_48_58
Type: pfam
Location: 61681 - 62328 (+)
Type: pfam
Location: 61681 - 62328 (+)
Gene ID: Rep_800_c_48_59
Type: TF
Location: 62336 - 63448 (+)
Type: TF
Location: 62336 - 63448 (+)
Gene ID: Rep_800_c_48_60
Type: TC
Location: 63607 - 64965 (+)
Type: TC
Location: 63607 - 64965 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas aeruginosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.