Cluster: Rep_800_CGC34
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate: alginate
- Genome ID: Rep_800
- CGC Family ID: CGCFAM_01485
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_800_c_44 | Rep_800_c_44_50 | 54430 | 56538 | - | 3.D.1.9.2 |
| TC | Rep_800_c_44 | Rep_800_c_44_51 | 56837 | 59824 | + | 1.B.12.5.6 |
| NULL(UNKNOWN) | Rep_800_c_44 | Rep_800_c_44_52 | 60218 | 60649 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_800_c_44 | Rep_800_c_44_53 | 60964 | 61881 | + | OTCace | OTCace_N |
| TC | Rep_800_c_44 | Rep_800_c_44_54 | 61886 | 62968 | + | 3.A.1.10.4 |
| pfam | Rep_800_c_44 | Rep_800_c_44_55 | 63075 | 63854 | + | H2O2_YaaD |
| pfam | Rep_800_c_44 | Rep_800_c_44_56 | 64756 | 66066 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | Rep_800_c_44 | Rep_800_c_44_57 | 66210 | 67691 | + | GT2 |
| pfam | Rep_800_c_44 | Rep_800_c_44_58 | 67774 | 68943 | + | PilZ | HlyD_3 |
| pfam | Rep_800_c_44 | Rep_800_c_44_59 | 68957 | 70384 | + | Sel1 | Sel1 | Sel1 |
| TC | Rep_800_c_44 | Rep_800_c_44_60 | 70381 | 71853 | + | 1.B.13.1.1 |
| pfam | Rep_800_c_44 | Rep_800_c_44_61 | 71874 | 73505 | + | NosD | Beta_helix |
| pfam | Rep_800_c_44 | Rep_800_c_44_62 | 73518 | 74942 | + | ALGX | CBM_26 |
| CAZyme | Rep_800_c_44 | Rep_800_c_44_63 | 74946 | 76049 | + | PL5_1 |
| TC | Rep_800_c_44 | Rep_800_c_44_64 | 76279 | 77841 | + | 2.A.50.2.1 |
Gene ID: Rep_800_c_44_50
Type: TC
Location: 54430 - 56538 (-)
Type: TC
Location: 54430 - 56538 (-)
Gene ID: Rep_800_c_44_51
Type: TC
Location: 56837 - 59824 (+)
Type: TC
Location: 56837 - 59824 (+)
Gene ID: Rep_800_c_44_52
Type:
Location: 60218 - 60649 (-)
Type:
Location: 60218 - 60649 (-)
Gene ID: Rep_800_c_44_53
Type: pfam
Location: 60964 - 61881 (+)
Type: pfam
Location: 60964 - 61881 (+)
Gene ID: Rep_800_c_44_54
Type: TC
Location: 61886 - 62968 (+)
Type: TC
Location: 61886 - 62968 (+)
Gene ID: Rep_800_c_44_55
Type: pfam
Location: 63075 - 63854 (+)
Type: pfam
Location: 63075 - 63854 (+)
Gene ID: Rep_800_c_44_56
Type: pfam
Location: 64756 - 66066 (+)
Type: pfam
Location: 64756 - 66066 (+)
Gene ID: Rep_800_c_44_57
Type: CAZyme
Location: 66210 - 67691 (+)
Type: CAZyme
Location: 66210 - 67691 (+)
Gene ID: Rep_800_c_44_58
Type: pfam
Location: 67774 - 68943 (+)
Type: pfam
Location: 67774 - 68943 (+)
Gene ID: Rep_800_c_44_59
Type: pfam
Location: 68957 - 70384 (+)
Type: pfam
Location: 68957 - 70384 (+)
Gene ID: Rep_800_c_44_60
Type: TC
Location: 70381 - 71853 (+)
Type: TC
Location: 70381 - 71853 (+)
Gene ID: Rep_800_c_44_61
Type: pfam
Location: 71874 - 73505 (+)
Type: pfam
Location: 71874 - 73505 (+)
Gene ID: Rep_800_c_44_62
Type: pfam
Location: 73518 - 74942 (+)
Type: pfam
Location: 73518 - 74942 (+)
Gene ID: Rep_800_c_44_63
Type: CAZyme
Location: 74946 - 76049 (+)
Type: CAZyme
Location: 74946 - 76049 (+)
Gene ID: Rep_800_c_44_64
Type: TC
Location: 76279 - 77841 (+)
Type: TC
Location: 76279 - 77841 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas aeruginosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.