Cluster: Rep_800_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_800
- CGC Family ID: CGCFAM_00359
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_800_c_26 | Rep_800_c_26_258 | 266781 | 268391 | - | 3.A.1.5.21 |
| TC | Rep_800_c_26 | Rep_800_c_26_259 | 268393 | 269412 | - | 3.A.1.5.21 |
| TC | Rep_800_c_26 | Rep_800_c_26_260 | 269417 | 270499 | - | 3.A.1.5.24 |
| TC | Rep_800_c_26 | Rep_800_c_26_261 | 270506 | 272353 | - | 3.A.1.5.21 |
| TC | Rep_800_c_26 | Rep_800_c_26_262 | 272350 | 274179 | - | 3.A.1.5.21 |
| CAZyme | Rep_800_c_26 | Rep_800_c_26_263 | 274370 | 275974 | - | GH23 |
Gene ID: Rep_800_c_26_258
Type: TC
Location: 266781 - 268391 (-)
Type: TC
Location: 266781 - 268391 (-)
Gene ID: Rep_800_c_26_259
Type: TC
Location: 268393 - 269412 (-)
Type: TC
Location: 268393 - 269412 (-)
Gene ID: Rep_800_c_26_260
Type: TC
Location: 269417 - 270499 (-)
Type: TC
Location: 269417 - 270499 (-)
Gene ID: Rep_800_c_26_261
Type: TC
Location: 270506 - 272353 (-)
Type: TC
Location: 270506 - 272353 (-)
Gene ID: Rep_800_c_26_262
Type: TC
Location: 272350 - 274179 (-)
Type: TC
Location: 272350 - 274179 (-)
Gene ID: Rep_800_c_26_263
Type: CAZyme
Location: 274370 - 275974 (-)
Type: CAZyme
Location: 274370 - 275974 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas aeruginosa
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.