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Cluster: Rep_800_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_800_c_26 Rep_800_c_26_162 163667 164089 + 3.A.6.1.1
TC Rep_800_c_26 Rep_800_c_26_163 164089 165891 + 1.B.22.3.3
TC Rep_800_c_26 Rep_800_c_26_164 165893 167191 + 3.A.6.1.1
pfam Rep_800_c_26 Rep_800_c_26_165 167154 167357 + T3SS_needle_E
TC Rep_800_c_26 Rep_800_c_26_166 167360 167617 + 3.A.6.1.1
TC Rep_800_c_26 Rep_800_c_26_167 167620 167967 + 3.A.6.1.1
pfam Rep_800_c_26 Rep_800_c_26_168 167964 168395 + T3SS_needle_reg
TC Rep_800_c_26 Rep_800_c_26_169 168395 168733 + 3.A.6.1.1
TC Rep_800_c_26 Rep_800_c_26_170 168742 169476 + 3.A.6.1.1
TC Rep_800_c_26 Rep_800_c_26_171 169485 170105 + 3.A.6.1.1
TC Rep_800_c_26 Rep_800_c_26_172 170084 170728 + 3.A.6.1.1
CAZyme Rep_800_c_26 Rep_800_c_26_173 170838 173132 - GH3
Gene ID: Rep_800_c_26_162
Type: TC
Location: 163667 - 164089 (+)
Gene ID: Rep_800_c_26_163
Type: TC
Location: 164089 - 165891 (+)
Gene ID: Rep_800_c_26_164
Type: TC
Location: 165893 - 167191 (+)
Gene ID: Rep_800_c_26_165
Type: pfam
Location: 167154 - 167357 (+)
Gene ID: Rep_800_c_26_166
Type: TC
Location: 167360 - 167617 (+)
Gene ID: Rep_800_c_26_167
Type: TC
Location: 167620 - 167967 (+)
Gene ID: Rep_800_c_26_168
Type: pfam
Location: 167964 - 168395 (+)
Gene ID: Rep_800_c_26_169
Type: TC
Location: 168395 - 168733 (+)
Gene ID: Rep_800_c_26_170
Type: TC
Location: 168742 - 169476 (+)
Gene ID: Rep_800_c_26_171
Type: TC
Location: 169485 - 170105 (+)
Gene ID: Rep_800_c_26_172
Type: TC
Location: 170084 - 170728 (+)
Gene ID: Rep_800_c_26_173
Type: CAZyme
Location: 170838 - 173132 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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