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Cluster: Rep_800_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_800_c_21 Rep_800_c_21_7 5332 5928 + GH23
TC Rep_800_c_21 Rep_800_c_21_8 6456 7892 + 9.B.18.1.1
pfam Rep_800_c_21 Rep_800_c_21_9 7892 9358 + NTP_transferase | MannoseP_isomer | Cupin_2 | ManC_GMP_beta-helix
CAZyme Rep_800_c_21 Rep_800_c_21_10 9358 10269 + GT2
TC Rep_800_c_21 Rep_800_c_21_11 10275 11069 + 1.B.18.3.1
NULL(UNKNOWN) Rep_800_c_21 Rep_800_c_21_12 11084 13072 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_800_c_21 Rep_800_c_21_13 13072 14259 + GT4
CAZyme Rep_800_c_21 Rep_800_c_21_14 14249 15577 + GH39
CAZyme Rep_800_c_21 Rep_800_c_21_15 15586 16794 + GT4
CAZyme Rep_800_c_21 Rep_800_c_21_16 16785 17888 + GT4
pfam Rep_800_c_21 Rep_800_c_21_17 17891 19327 + Wzy_C
TC Rep_800_c_21 Rep_800_c_21_18 19329 20738 + 2.A.66.4.7
Gene ID: Rep_800_c_21_7
Type: CAZyme
Location: 5332 - 5928 (+)
Gene ID: Rep_800_c_21_8
Type: TC
Location: 6456 - 7892 (+)
Gene ID: Rep_800_c_21_9
Type: pfam
Location: 7892 - 9358 (+)
Gene ID: Rep_800_c_21_10
Type: CAZyme
Location: 9358 - 10269 (+)
Gene ID: Rep_800_c_21_11
Type: TC
Location: 10275 - 11069 (+)
Gene ID: Rep_800_c_21_12
Type:
Location: 11084 - 13072 (+)
Gene ID: Rep_800_c_21_13
Type: CAZyme
Location: 13072 - 14259 (+)
Gene ID: Rep_800_c_21_14
Type: CAZyme
Location: 14249 - 15577 (+)
Gene ID: Rep_800_c_21_15
Type: CAZyme
Location: 15586 - 16794 (+)
Gene ID: Rep_800_c_21_16
Type: CAZyme
Location: 16785 - 17888 (+)
Gene ID: Rep_800_c_21_17
Type: pfam
Location: 17891 - 19327 (+)
Gene ID: Rep_800_c_21_18
Type: TC
Location: 19329 - 20738 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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