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Cluster: Rep_800_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_800_c_20 Rep_800_c_20_47 48955 50952 - 9.B.18.2.1
TC Rep_800_c_20 Rep_800_c_20_48 51083 52108 - 9.B.146.1.2
pfam Rep_800_c_20 Rep_800_c_20_49 52105 53064 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme Rep_800_c_20 Rep_800_c_20_50 53061 54242 - GT4
pfam Rep_800_c_20 Rep_800_c_20_51 54239 55204 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
CAZyme Rep_800_c_20 Rep_800_c_20_52 55563 56453 - GT2
pfam Rep_800_c_20 Rep_800_c_20_53 56459 57883 - O-ag_pol_Wzy
pfam Rep_800_c_20 Rep_800_c_20_54 57938 59365 - Polysacc_synt
CAZyme Rep_800_c_20 Rep_800_c_20_55 59365 60597 - GT4
Gene ID: Rep_800_c_20_47
Type: TC
Location: 48955 - 50952 (-)
Gene ID: Rep_800_c_20_48
Type: TC
Location: 51083 - 52108 (-)
Gene ID: Rep_800_c_20_49
Type: pfam
Location: 52105 - 53064 (-)
Gene ID: Rep_800_c_20_50
Type: CAZyme
Location: 53061 - 54242 (-)
Gene ID: Rep_800_c_20_51
Type: pfam
Location: 54239 - 55204 (-)
Gene ID: Rep_800_c_20_52
Type: CAZyme
Location: 55563 - 56453 (-)
Gene ID: Rep_800_c_20_53
Type: pfam
Location: 56459 - 57883 (-)
Gene ID: Rep_800_c_20_54
Type: pfam
Location: 57938 - 59365 (-)
Gene ID: Rep_800_c_20_55
Type: CAZyme
Location: 59365 - 60597 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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