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Cluster: Rep_77_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_77_c_65 Rep_77_c_65_22 28394 30673 + GH92
pfam Rep_77_c_65 Rep_77_c_65_23 30707 31648 + Exo_endo_phos
CAZyme Rep_77_c_65 Rep_77_c_65_24 31654 32814 + GH130_3
TC Rep_77_c_65 Rep_77_c_65_25 33313 36309 + 1.B.14.6.1
TC Rep_77_c_65 Rep_77_c_65_26 36337 37959 + 8.A.46.1.1
CAZyme Rep_77_c_65 Rep_77_c_65_27 38208 41768 + GH38
CAZyme Rep_77_c_65 Rep_77_c_65_28 41858 44185 + GH92
pfam Rep_77_c_65 Rep_77_c_65_29 44223 45017 + BSP
CAZyme Rep_77_c_65 Rep_77_c_65_30 45028 47364 + GH92
CAZyme Rep_77_c_65 Rep_77_c_65_31 47528 49789 + GH92
CAZyme Rep_77_c_65 Rep_77_c_65_32 49816 51000 + GH76
Gene ID: Rep_77_c_65_22
Type: CAZyme
Location: 28394 - 30673 (+)
Gene ID: Rep_77_c_65_23
Type: pfam
Location: 30707 - 31648 (+)
Gene ID: Rep_77_c_65_24
Type: CAZyme
Location: 31654 - 32814 (+)
Gene ID: Rep_77_c_65_25
Type: TC
Location: 33313 - 36309 (+)
Gene ID: Rep_77_c_65_26
Type: TC
Location: 36337 - 37959 (+)
Gene ID: Rep_77_c_65_27
Type: CAZyme
Location: 38208 - 41768 (+)
Gene ID: Rep_77_c_65_28
Type: CAZyme
Location: 41858 - 44185 (+)
Gene ID: Rep_77_c_65_29
Type: pfam
Location: 44223 - 45017 (+)
Gene ID: Rep_77_c_65_30
Type: CAZyme
Location: 45028 - 47364 (+)
Gene ID: Rep_77_c_65_31
Type: CAZyme
Location: 47528 - 49789 (+)
Gene ID: Rep_77_c_65_32
Type: CAZyme
Location: 49816 - 51000 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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